Sequence Similarity Clusters for the Entities in PDB 6D01

Entity #1 | Chains: A,C,E,G
1210 Antibody, heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23192
95 % 1 1 23054 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 261 328 18
70 % 2235 2928 1
50 % 2352 3079 1
40 % 2352 3079 1
30 % 4697 6153 1
Entity #2 | Chains: B,D,F,H
1210 Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18425
95 % 157 213 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 406 538 4
70 % 1867 2391 2
50 % 2314 3030 2
40 % 2314 3030 2
30 % 4698 6153 1
Entity #3 | Chains: I,J
NANP5 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 15603
95 % 2 4 13346
90 % 2 4 13165
70 % 2 4 12490
50 % 2 4 11438
40 % 2 4 10754
30 % 2 4 9931

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures