6CM3

BG505 SOSIP in complex with sCD4, 17b, 8ANC195


Sequence Similarity Clusters for the Entities in PDB 6CM3

Entity #1 | Chains: A,B,C
Envelope glycoprotein gp160 protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 48 463
95 % 66 75 280
90 % 67 76 290
70 % 92 104 237
50 % 92 104 258
40 % 92 104 276
30 % 92 104 295
Entity #2 | Chains: D,E,F
Envelope glycoprotein gp160 protein, length: 481 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 32 625
95 % 66 78 272
90 % 66 78 284
70 % 211 227 92
50 % 99 113 210
40 % 101 115 224
30 % 101 115 239
Entity #3 | Chains: G,H,I
T-cell surface glycoprotein CD4 protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 42 745
95 % 42 49 858
90 % 42 49 889
70 % 43 50 901
50 % 43 50 939
40 % 43 50 971
30 % 43 50 1018
Entity #4 | Chains: J,L,N
17b Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 22 1582
95 % 35 40 1075
90 % 256 260 71
70 % 2433 2511 2
50 % 6313 6488 1
40 % 6317 6492 1
30 % 6358 6539 1
Entity #5 | Chains: K,M,O
17b Fab heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 22 1604
95 % 22 26 1717
90 % 22 26 1750
70 % 3026 3106 1
50 % 6314 6488 1
40 % 6318 6492 1
30 % 6359 6539 1
Entity #6 | Chains: P,R,T
8ANC195 Fab heavy chain protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 4149
95 % 9 14 2285
90 % 9 14 2339
70 % 3027 3106 1
50 % 6315 6488 1
40 % 6319 6492 1
30 % 6360 6539 1
Entity #7 | Chains: Q,S,U
8ANC195 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3283
95 % 9 14 2327
90 % 9 14 2374
70 % 2434 2511 2
50 % 6316 6488 1
40 % 6320 6492 1
30 % 6361 6539 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures