6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Sequence Similarity Clusters for the Entities in PDB 6CIL

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 625 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14364
95 % 8 8 5410
90 % 8 8 5449
70 % 8 8 5381
50 % 8 8 5213
40 % 8 8 5058
30 % 8 9 4354
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11972
95 % 7 7 6280
90 % 7 7 6305
70 % 8 8 5366
50 % 8 8 5198
40 % 8 8 5042
30 % 8 8 4871
Entity #3 | Chains: N
High mobility group protein B1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 5713
95 % 7 12 6715
90 % 7 12 6735
70 % 7 12 6456
50 % 7 13 5739
40 % 7 13 5582
30 % 7 13 5325
Entity #4 | Chains: F
Intact 12RSS substrate reverse strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I
Intact 12RSS substrate forward strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
Intact 23RSS substrate reverse strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Intact 23RSS substrate forward strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ZE0 2 B, D mouse RAG2 GP remains after prescission cleavage UNP residues 1-387 10090
2 5ZDZ 2 B, D mouse RAG2 UNP residues 1-387 10090
3 5ZE1 2 B, D mouse RAG2 UNP residues 1-387 10090
4 6CIK 2 B, D V(D)J recombination-activating protein 2 10090
5 4WWX 2 X, Y V(D)J recombination-activating protein 2 10090
6 5ZE2 2 B, D mouse RAG2 UNP residues 1-387 10090
7 6CIM 2 B, D V(D)J recombination-activating protein 2 10090
8 6CIL 2 B, D V(D)J recombination-activating protein 2 10090