6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Sequence Similarity Clusters for the Entities in PDB 6CIL

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 625 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 16378
95 % 8 8 5374
90 % 8 8 5432
70 % 8 8 5353
50 % 8 8 5188
40 % 8 8 5053
30 % 8 9 4339
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11886
95 % 7 7 6259
90 % 7 7 6292
70 % 8 8 5354
50 % 8 8 5189
40 % 8 8 5054
30 % 8 8 4871
Entity #3 | Chains: N
High mobility group protein B1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 5708
95 % 7 12 6605
90 % 7 12 6825
70 % 7 12 6502
50 % 7 13 5815
40 % 7 13 5673
30 % 7 13 5411
Entity #4 | Chains: F
Intact 12RSS substrate reverse strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I
Intact 12RSS substrate forward strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
Intact 23RSS substrate reverse strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Intact 23RSS substrate forward strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ZE0 2 B, D mouse RAG2 GP remains after prescission cleavage UNP residues 1-387 10090
2 5ZDZ 2 B, D mouse RAG2 UNP residues 1-387 10090
3 5ZE1 2 B, D mouse RAG2 UNP residues 1-387 10090
4 6CIK 2 B, D V(D)J recombination-activating protein 2 10090
5 4WWX 2 X, Y V(D)J recombination-activating protein 2 10090
6 5ZE2 2 B, D mouse RAG2 UNP residues 1-387 10090
7 6CIM 2 B, D V(D)J recombination-activating protein 2 10090
8 6CIL 2 B, D V(D)J recombination-activating protein 2 10090