6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Sequence Similarity Clusters for the Entities in PDB 6CIL

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 625 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14221
95 % 8 8 5220
90 % 8 8 5272
70 % 8 8 5217
50 % 8 8 5013
40 % 8 8 4942
30 % 8 9 4277
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11860
95 % 7 7 6199
90 % 7 7 6226
70 % 8 8 5300
50 % 8 8 5125
40 % 8 8 5007
30 % 8 8 4832
Entity #3 | Chains: N
High mobility group protein B1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 5728
95 % 7 12 6698
90 % 7 12 6695
70 % 7 12 6588
50 % 7 13 5935
40 % 7 13 5792
30 % 7 13 5509
Entity #4 | Chains: F
Intact 12RSS substrate reverse strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I
Intact 12RSS substrate forward strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
Intact 23RSS substrate reverse strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Intact 23RSS substrate forward strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ZE0 2 B, D mouse RAG2 GP remains after prescission cleavage UNP residues 1-387 10090
2 5ZDZ 2 B, D mouse RAG2 UNP residues 1-387 10090
3 5ZE1 2 B, D mouse RAG2 UNP residues 1-387 10090
4 6CIK 2 B, D V(D)J recombination-activating protein 2 10090
5 4WWX 2 X, Y V(D)J recombination-activating protein 2 10090
6 5ZE2 2 B, D mouse RAG2 UNP residues 1-387 10090
7 6CIM 2 B, D V(D)J recombination-activating protein 2 10090
8 6CIL 2 B, D V(D)J recombination-activating protein 2 10090