6CIL

PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+


Sequence Similarity Clusters for the Entities in PDB 6CIL

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 625 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14244
95 % 8 8 5183
90 % 8 8 5304
70 % 8 8 5186
50 % 8 8 5063
40 % 8 8 4899
30 % 8 9 4268
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11868
95 % 7 7 6208
90 % 7 7 6145
70 % 8 8 5329
50 % 8 8 5161
40 % 8 8 5021
30 % 8 8 4841
Entity #3 | Chains: N
High mobility group protein B1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 12 5813
95 % 7 12 6457
90 % 7 12 6477
70 % 7 12 6369
50 % 7 13 5646
40 % 7 13 5501
30 % 7 13 5249
Entity #4 | Chains: F
Intact 12RSS substrate reverse strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I
Intact 12RSS substrate forward strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
Intact 23RSS substrate reverse strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Intact 23RSS substrate forward strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ZE0 1 A, C mouse RAG1 after presicssion cleavage, GP sequence remains. UNP residues 383-1008 10090 2.3.2.27 | Details 3.1 | Details
2 5ZDZ 1 A, C mouse RAG1 UNP residues 384-1008 10090 2.3.2.27 | Details 3.1 | Details
3 5ZE1 1 A, C mouse RAG1 UNP residues 384-1008 10090 2.3.2.27 | Details 3.1 | Details
4 6CIK 1 A, C V(D)J recombination-activating protein 1 10090 2.3.2.27 | Details 3.1 | Details
5 4WWX 1 B, E V(D)J recombination-activating protein 1 UNP Residues 391-1008 10090 3.1 | Details 6.3.2 | Details
6 5ZE2 1 A, C mouse RAG1 UNP residues 384-1008 10090 2.3.2.27 | Details 3.1 | Details
7 6CIM 1 A, C V(D)J recombination-activating protein 1 10090 2.3.2.27 | Details 3.1 | Details
8 6CIL 1 A, C V(D)J recombination-activating protein 1 10090 2.3.2.27 | Details 3.1 | Details
9 6B40 1 A, E RAG1L,RAG1L 7741