Sequence Similarity Clusters for the Entities in PDB 6CIL

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 625 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16148
95 % 8 8 5257 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 5.6
PDBFlex
90 % 8 8 5298
70 % 8 8 5257
50 % 8 8 5097
40 % 8 8 4958
30 % 8 9 4260
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11677
95 % 7 7 6132 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 7 6167
70 % 8 8 5258
50 % 8 8 5098
40 % 8 8 4959
30 % 8 8 4790
Entity #3 | Chains: N
High mobility group protein B1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 5545
95 % 7 12 6542 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.9
PDBFlex
90 % 7 12 6555
70 % 7 12 6311
50 % 7 13 5594
40 % 7 13 5458
30 % 7 13 5206
Entity #4 | Chains: F
Intact 12RSS substrate reverse strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: I
Intact 12RSS substrate forward strand dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
Intact 23RSS substrate reverse strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Intact 23RSS substrate forward strand dna, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures