Sequence Similarity Clusters for the Entities in PDB 6CG0

Entity #1 | Chains: A,C
V(D)J recombination-activating protein 1 protein, length: 775 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27836
95 % 3 3 17561
90 % 3 3 17249
70 % 3 6 7812
50 % 3 6 7430
40 % 3 6 7151
30 % 3 6 6653
Entity #2 | Chains: B,D
V(D)J recombination-activating protein 2 protein, length: 520 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 18350
95 % 11 11 3810
90 % 11 11 3884
70 % 11 11 3868
50 % 22 25 1490
40 % 22 25 1534
30 % 22 25 1576
Entity #3 | Chains: F
DNA (46-MER) dna, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: I
DNA (5'-D(*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: J
DNA (5'-D(P*CP*TP*GP*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: G
DNA (60-MER) dna, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: L
DNA (30-MER) dna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: M
DNA (41-MER) dna, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: N
High mobility group protein B1 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 81177
95 % 1 1 52086
90 % 1 1 49237
70 % 1 1 43036
50 % 1 1 37162
40 % 1 1 33632
30 % 1 1 29656

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures