Sequence Similarity Clusters for the Entities in PDB 6BYU

Entity #1 | Chains: A,B,G,H
DNA-directed RNA polymerase subunit alpha protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 55 198
95 % 5 55 259 Flexibility: Low
Max RMSD: 32.4, Avg RMSD: 2.4
PDBFlex
90 % 5 55 273
70 % 5 55 319
50 % 5 57 365
40 % 67 158 123
30 % 68 159 132
Entity #2 | Chains: C,I
DNA-directed RNA polymerase subunit beta protein, length: 1342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27901
95 % 9 84 386 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 9 84 404
70 % 9 84 437
50 % 9 86 474
40 % 9 86 501
30 % 9 86 527
Entity #3 | Chains: D,J
DNA-directed RNA polymerase subunit beta' protein, length: 1407 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 74 318
95 % 9 84 387 Flexibility: Medium
Max RMSD: 10.8, Avg RMSD: 4.2
PDBFlex
90 % 9 84 406
70 % 9 86 429
50 % 9 86 475
40 % 31 127 385
30 % 71 184 217
Entity #4 | Chains: E,K
DNA-directed RNA polymerase subunit omega protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 81 298
95 % 9 81 398 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 9 81 416
70 % 9 81 451
50 % 9 81 491
40 % 9 83 513
30 % 9 83 539
Entity #5 | Chains: F,L
RNA polymerase sigma factor RpoD protein, length: 613 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 35 606
95 % 7 40 756 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.6
PDBFlex
90 % 7 40 797
70 % 7 40 825
50 % 7 40 859
40 % 7 40 908
30 % 7 40 941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures