Sequence Similarity Clusters for the Entities in PDB 6BYH

Entity #1 | Chains: A,B,G
S-phase kinase-associated protein 1 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 3831
95 % 8 13 4604 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 8 13 4660
70 % 19 28 1629
50 % 19 28 1664
40 % 19 28 1727
30 % 19 28 1752
Entity #2 | Chains: E,F,I
Lysine-specific demethylase 2A protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20247
95 % 1 2 18727 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 2 18348
70 % 1 2 17056
50 % 2 3 11486
40 % 2 3 10798
30 % 2 3 9958
Entity #3 | Chains: C,D,H
Polyubiquitin-B protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36873
95 % 1 1 30005 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29269
70 % 338 555 9
50 % 339 570 10
40 % 339 574 12
30 % 351 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures