Sequence Similarity Clusters for the Entities in PDB 6B3M

Entity #1 | Chains: A,E,G,K,Q,S
Hemagglutinin HA1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 1549
95 % 57 58 263 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.9
PDBFlex
90 % 74 75 229
70 % 79 80 237
50 % 175 184 92
40 % 376 391 15
30 % 376 391 21
Entity #2 | Chains: B,F,H,L,R,T
Hemagglutinin HA2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 46 308
95 % 80 81 199 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 1.1
PDBFlex
90 % 91 92 160
70 % 177 185 58
50 % 364 377 11
40 % 364 377 17
30 % 374 388 24
Entity #3 | Chains: C,I,M,O,V,Y
70-1F02 Fab Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16010
95 % 1 1 15597 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 48 49 730
70 % 2786 3009 1
50 % 5802 6290 1
40 % 5802 6290 1
30 % 5842 6336 1
Entity #4 | Chains: D,J,N,P,U,W
70-1F02 Fab Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16009
95 % 112 115 223 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 235 246 73
70 % 2275 2442 2
50 % 5803 6290 1
40 % 5803 6290 1
30 % 5843 6336 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures