Sequence Similarity Clusters for the Entities in PDB 6AXF

Entity #1 | Chains: A,C,E,G,I,K,M,O
RAS guanyl-releasing protein 2 protein, length: 397 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 11852
95 % 1 1 11166 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 1 11317
70 % 1 1 10612
50 % 1 1 9985
40 % 1 2 5531
30 % 1 2 5268
Entity #2 | Chains: B,D,F,H,J,L,N,P
Ras-related protein Rap-1b protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 2705
95 % 17 22 1977 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.0
PDBFlex
90 % 17 22 2025
70 % 17 22 2076
50 % 367 401 63
40 % 367 401 83
30 % 570 657 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures