6AVT

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING D4TTP AT PH 9.5 WITH CROSS-LINKING TO FIRST BASE TEMPLATE OVERHANG


Sequence Similarity Clusters for the Entities in PDB 6AVT

Entity #1 | Chains: A,C
HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT protein, length: 556 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 5187
95 % 69 305 108
90 % 69 305 116
70 % 69 305 126
50 % 70 306 142
40 % 70 307 160
30 % 70 307 167
Entity #2 | Chains: B,D
HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 132 215
95 % 67 299 115
90 % 67 299 121
70 % 67 299 133
50 % 68 300 150
40 % 68 301 166
30 % 68 301 173
Entity #3 | Chains: E,T
DNA (27-MER) dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,P
DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DDG))-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures