6AKU

Cryo-EM structure of CVA10 empty particle


Sequence Similarity Clusters for the Entities in PDB 6AKU

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 36690
95 % 5 11 8363
90 % 8 14 6378
70 % 8 14 6256
50 % 50 68 768
40 % 126 232 197
30 % 128 236 207
Entity #2 | Chains: B
VP2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 38059
95 % 7 11 8464
90 % 7 11 8174
70 % 42 58 1233
50 % 120 233 195
40 % 120 233 210
30 % 125 246 214
Entity #3 | Chains: C
VP3 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 34629
95 % 8 14 6332
90 % 8 14 6441
70 % 8 18 4781
50 % 128 243 177
40 % 130 247 185
30 % 151 289 128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures