Sequence Similarity Clusters for the Entities in PDB 6A77

Entity #1 | Chains: A
Roundabout homolog 1 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 15190
95 % 1 4 14577 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 4 15392
70 % 1 4 13544
50 % 1 4 12315
40 % 1 4 11515
30 % 4 10 2421
Entity #2 | Chains: L
Light chain of the anti-human Robo1 antibody B5209B Fab protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 49570
95 % 2 2 38014 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 2 2 36309
70 % 739 2352 2
50 % 944 2983 2
40 % 944 2983 2
30 % 1932 6055 1
Entity #3 | Chains: H
Heavy chain of the anti-human Robo1 antibody B5209B Fab protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38929
95 % 2 2 38013 Flexibility: Medium
Max RMSD: 5.1, Avg RMSD: 5.1
PDBFlex
90 % 2 2 30205
70 % 920 2883 1
50 % 975 3028 1
40 % 975 3028 1
30 % 1933 6055 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures