Sequence Similarity Clusters for the Entities in PDB 6A6I

Entity #1 | Chains: A,C,E,G
Excision repair cross-complementing rodent repair deficiency, complementation group 6 variant protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21227
95 % 1 1 20138 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.1
PDBFlex
90 % 1 1 19670
70 % 1 1 18215
50 % 1 1 16300
40 % 1 1 15106
30 % 1 1 13671
Entity #2 | Chains: B,D
Polyubiquitin-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 5287
95 % 237 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 243 504 6
70 % 270 555 9
50 % 272 570 10
40 % 272 574 12
30 % 281 595 19
Entity #3 | Chains: F,H
Polyubiquitin-B protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 192 393 4
95 % 238 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 244 504 6
70 % 271 555 9
50 % 273 570 10
40 % 273 574 12
30 % 282 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures