Sequence Similarity Clusters for the Entities in PDB 6A5P

Entity #1 | Chains: A
DNA-directed RNA polymerase subunit protein, length: 1743 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2927
95 % 14 19 3646
90 % 14 19 3724
70 % 133 151 341
50 % 134 153 396
40 % 134 153 419
30 % 134 153 433
Entity #10 | Chains: J
RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2841
95 % 14 19 3553
90 % 14 19 3627
70 % 146 213 236
50 % 146 213 245
40 % 146 213 260
30 % 146 213 279
Entity #11 | Chains: K
RNA polymerase II subunit B12.5 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2973
95 % 14 19 3689
90 % 14 19 3774
70 % 14 19 3750
50 % 133 153 403
40 % 134 155 416
30 % 134 155 428
Entity #12 | Chains: L
RNA polymerase subunit ABC10-alpha protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 4019
95 % 14 19 3581
90 % 14 19 3773
70 % 14 19 3688
50 % 142 192 309
40 % 142 192 325
30 % 142 192 343
Entity #13 | Chains: P
RNA (5'-R(P*UP*GP*GP*GP*UP*GP*GP*UP*GP*GP*C)-3') rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: T
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: N
DNA (198-MER) dna, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: a,e
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 24 1080
95 % 210 230 62
90 % 216 238 64
70 % 219 241 70
50 % 227 250 91
40 % 227 250 106
30 % 227 250 108
Entity #17 | Chains: b,f
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 210 233 40
95 % 232 255 39
90 % 239 264 37
70 % 238 263 48
50 % 238 263 85
40 % 238 263 101
30 % 238 263 102
Entity #18 | Chains: c,g
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 87 184
95 % 206 234 60
90 % 195 220 69
70 % 201 226 76
50 % 201 226 100
40 % 201 226 118
30 % 201 226 124
Entity #19 | Chains: d,h
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 83 195
95 % 148 159 112
90 % 199 225 68
70 % 210 236 72
50 % 214 242 95
40 % 214 242 111
30 % 214 242 114
Entity #2 | Chains: B
DNA-directed RNA polymerase subunit beta protein, length: 1227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2986
95 % 14 19 3697
90 % 14 19 3780
70 % 134 155 333
50 % 135 170 365
40 % 143 178 353
30 % 143 193 337
Entity #3 | Chains: C
RNA polymerase II third largest subunit B44, part of central core protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2962
95 % 14 19 3684
90 % 14 19 3765
70 % 14 19 3742
50 % 14 19 3674
40 % 14 19 3672
30 % 14 19 3585
Entity #4 | Chains: D
RNA polymerase II subunit B32 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2938
95 % 14 19 3658
90 % 14 19 3734
70 % 14 19 3715
50 % 14 19 3650
40 % 15 21 3362
30 % 15 21 3290
Entity #5 | Chains: E
RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2926
95 % 14 19 3645
90 % 14 19 3723
70 % 145 197 258
50 % 146 199 286
40 % 147 214 253
30 % 147 214 272
Entity #6 | Chains: F
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2909
95 % 14 19 3627
90 % 14 19 3708
70 % 14 19 3754
50 % 143 193 304
40 % 143 193 319
30 % 143 193 335
Entity #7 | Chains: G
RNA polymerase II subunit protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2985
95 % 14 19 3696
90 % 14 19 3779
70 % 14 19 3757
50 % 76 110 510
40 % 76 110 543
30 % 76 110 567
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2908
95 % 14 19 3591
90 % 14 19 3707
70 % 14 19 3689
50 % 144 197 295
40 % 144 197 308
30 % 145 213 284
Entity #9 | Chains: I
DNA-directed RNA polymerase subunit protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 2963
95 % 14 19 3685
90 % 14 19 3766
70 % 132 152 339
50 % 133 154 394
40 % 134 169 386
30 % 134 184 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures