Sequence Similarity Clusters for the Entities in PDB 5ZLU

Entity #1 | Chains: W
RNA (25-mer) rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 277 49
95 % 255 277 72
90 % 255 277 77
70 % 255 277 85
50 % 281 357 86
40 % 281 357 102
30 % 281 357 103
Entity #11 | Chains: J
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 302 326 36
95 % 305 334 46
90 % 305 334 51
70 % 305 334 60
50 % 381 515 31
40 % 387 544 30
30 % 387 544 35
Entity #12 | Chains: K
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 305 333 32
95 % 305 333 50
90 % 305 333 54
70 % 305 333 63
50 % 386 534 27
40 % 386 534 36
30 % 386 534 40
Entity #13 | Chains: L
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 307 338 25
95 % 313 344 38
90 % 313 344 43
70 % 313 344 52
50 % 313 344 89
40 % 313 344 104
30 % 321 371 97
Entity #14 | Chains: M
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 306 337 26
95 % 306 338 45
90 % 306 338 50
70 % 306 336 59
50 % 371 471 54
40 % 371 477 66
30 % 371 477 69
Entity #15 | Chains: N
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 302 333 28
95 % 302 333 49
90 % 306 337 49
70 % 306 337 57
50 % 390 543 22
40 % 390 549 28
30 % 488 739 23
Entity #16 | Chains: O
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 232 60
95 % 304 333 51
90 % 304 333 55
70 % 304 333 64
50 % 384 527 30
40 % 384 527 38
30 % 384 527 42
Entity #17 | Chains: P
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 333 31
95 % 304 333 52
90 % 304 333 56
70 % 304 333 65
50 % 381 533 28
40 % 381 533 37
30 % 381 533 41
Entity #18 | Chains: Q
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 244 55
95 % 304 340 44
90 % 304 340 48
70 % 381 537 15
50 % 385 554 20
40 % 385 554 27
30 % 385 554 33
Entity #19 | Chains: R
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 334 29
95 % 304 334 48
90 % 304 334 53
70 % 304 334 62
50 % 386 538 26
40 % 388 541 33
30 % 388 541 37
Entity #2 | Chains: A
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 101 308
95 % 298 326 57
90 % 302 330 61
70 % 302 330 69
50 % 302 330 94
40 % 302 330 110
30 % 302 330 112
Entity #20 | Chains: S
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 332 33
95 % 304 332 55
90 % 304 332 59
70 % 304 339 56
50 % 308 352 87
40 % 308 352 103
30 % 308 352 105
Entity #21 | Chains: T
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 336 27
95 % 309 341 43
90 % 309 341 46
70 % 309 341 55
50 % 394 550 21
40 % 394 550 29
30 % 394 550 34
Entity #22 | Chains: U
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 328 35
95 % 304 333 53
90 % 304 333 57
70 % 304 333 66
50 % 304 333 92
40 % 304 333 107
30 % 304 333 109
Entity #23 | Chains: V
23S ribosomal RNA rna, length: 2875 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: X
5S ribosomal RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #25 | Chains: Y
50S ribosomal protein L1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 34 1022
95 % 86 101 288
90 % 86 101 302
70 % 86 101 350
50 % 96 164 277
40 % 96 164 288
30 % 96 164 313
Entity #26 | Chains: Z
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 200 67
95 % 186 200 97
90 % 186 200 99
70 % 210 224 93
50 % 313 461 48
40 % 313 461 57
30 % 313 461 59
Entity #27 | Chains: a
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 65
95 % 185 199 92
90 % 185 199 97
70 % 185 199 108
50 % 324 467 47
40 % 324 471 54
30 % 324 472 56
Entity #28 | Chains: b
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 184 85
95 % 186 200 94
90 % 186 200 100
70 % 186 200 110
50 % 215 229 118
40 % 217 239 134
30 % 319 453 67
Entity #29 | Chains: c
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 185 81
95 % 188 202 82
90 % 188 202 87
70 % 212 226 91
50 % 314 456 50
40 % 314 456 59
30 % 314 456 61
Entity #3 | Chains: B
30S ribosomal protein S18 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 6015
95 % 48 55 733
90 % 48 55 779
70 % 48 55 808
50 % 48 55 843
40 % 48 55 882
30 % 48 55 917
Entity #30 | Chains: d
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 63
95 % 185 199 89
90 % 185 199 95
70 % 185 199 106
50 % 209 231 115
40 % 312 462 55
30 % 312 462 57
Entity #31 | Chains: e
50S ribosomal protein L10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 18 2050
95 % 16 18 2626
90 % 16 18 2687
70 % 16 18 2715
50 % 16 18 2729
40 % 16 18 2748
30 % 28 75 809
Entity #32 | Chains: f
50S ribosomal protein L11 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 41 675
95 % 32 44 829
90 % 32 44 867
70 % 53 65 634
50 % 122 264 153
40 % 122 264 168
30 % 124 272 167
Entity #33 | Chains: g
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 195 73
95 % 182 196 101
90 % 182 196 107
70 % 182 196 118
50 % 187 201 128
40 % 292 434 70
30 % 292 434 75
Entity #34 | Chains: h
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 25 1218
95 % 185 199 95
90 % 185 199 101
70 % 235 273 80
50 % 319 474 44
40 % 319 474 49
30 % 319 474 52
Entity #35 | Chains: i
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 69
95 % 185 199 96
90 % 185 199 104
70 % 185 199 111
50 % 206 240 113
40 % 314 456 60
30 % 314 456 62
Entity #36 | Chains: j
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 183 88
95 % 185 200 87
90 % 185 200 93
70 % 212 227 92
50 % 310 459 49
40 % 310 459 58
30 % 310 459 60
Entity #37 | Chains: k
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 204 54
95 % 190 204 79
90 % 190 204 84
70 % 190 204 97
50 % 299 420 58
40 % 318 458 53
30 % 318 460 55
Entity #38 | Chains: l
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 184 83
95 % 172 184 111
90 % 172 184 118
70 % 172 184 127
50 % 298 441 57
40 % 298 441 72
30 % 298 441 77
Entity #39 | Chains: m
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 180 89
95 % 185 197 100
90 % 185 197 106
70 % 179 189 125
50 % 179 189 146
40 % 179 189 161
30 % 179 189 162
Entity #4 | Chains: C
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 256 276 48
95 % 304 332 56
90 % 304 332 60
70 % 304 332 68
50 % 304 332 93
40 % 304 332 108
30 % 304 332 110
Entity #40 | Chains: n
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 194 75
95 % 185 199 98
90 % 185 199 103
70 % 185 199 113
50 % 319 461 46
40 % 319 469 51
30 % 319 469 53
Entity #41 | Chains: o
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 62
95 % 185 199 90
90 % 185 199 96
70 % 185 199 107
50 % 232 258 105
40 % 318 456 61
30 % 318 456 63
Entity #42 | Chains: p
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 191 207 58
95 % 192 208 80
90 % 192 208 85
70 % 192 208 98
50 % 295 430 59
40 % 295 430 73
30 % 295 430 78
Entity #43 | Chains: q
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 200 61
95 % 185 200 88
90 % 185 200 94
70 % 185 200 105
50 % 211 226 120
40 % 316 462 56
30 % 316 462 58
Entity #44 | Chains: r
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 64
95 % 185 199 91
90 % 185 199 102
70 % 185 199 112
50 % 290 434 56
40 % 290 434 71
30 % 290 436 76
Entity #45 | Chains: s
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 72
95 % 186 200 86
90 % 186 200 92
70 % 186 200 104
50 % 186 200 132
40 % 186 200 150
30 % 195 212 150
Entity #46 | Chains: t
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 181 87
95 % 186 200 83
90 % 186 200 88
70 % 186 200 101
50 % 314 454 51
40 % 314 454 62
30 % 314 454 64
Entity #47 | Chains: u
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 11979
95 % 179 192 106
90 % 179 192 114
70 % 179 192 123
50 % 179 192 143
40 % 263 388 87
30 % 289 414 83
Entity #48 | Chains: v
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 206 57
95 % 190 206 81
90 % 190 206 86
70 % 190 206 99
50 % 190 206 127
40 % 316 451 65
30 % 316 451 68
Entity #49 | Chains: CC,w
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 182 92
95 % 169 182 116
90 % 169 182 125
70 % 169 182 134
50 % 183 198 148
40 % 199 275 126
30 % 199 276 136
Entity #5 | Chains: D
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 291 45
95 % 264 291 64
90 % 264 291 71
70 % 306 336 58
50 % 385 540 23
40 % 385 540 31
30 % 385 540 36
Entity #50 | Chains: x
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 183 86
95 % 180 194 103
90 % 180 194 111
70 % 180 194 120
50 % 214 228 121
40 % 214 228 140
30 % 317 448 72
Entity #51 | Chains: y
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72483
95 % 166 180 115
90 % 166 180 124
70 % 166 180 131
50 % 175 204 144
40 % 280 417 79
30 % 280 417 86
Entity #52 | Chains: z
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 199 66
95 % 185 199 93
90 % 185 199 98
70 % 185 199 109
50 % 318 455 52
40 % 318 455 63
30 % 318 455 65
Entity #53 | Chains: AA
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 200 70
95 % 186 200 99
90 % 186 200 105
70 % 186 200 114
50 % 214 228 119
40 % 310 444 67
30 % 310 444 71
Entity #54 | Chains: BB
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 147 110
95 % 131 147 142
90 % 131 147 149
70 % 168 209 132
50 % 246 395 79
40 % 246 395 95
30 % 246 395 94
Entity #55 | Chains: DD
P-site tRNA rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: EE
Macrolide efflux protein protein, length: 497 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72485
95 % 1 1 51968
90 % 1 1 49216
70 % 1 1 43093
50 % 1 1 37258
40 % 1 1 33666
30 % 1 1 29714
Entity #6 | Chains: E
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 303 331 34
95 % 304 332 54
90 % 304 332 58
70 % 304 332 67
50 % 389 538 24
40 % 389 538 32
30 % 408 571 31
Entity #7 | Chains: F
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 267 290 46
95 % 267 290 66
90 % 267 290 73
70 % 267 290 82
50 % 267 290 104
40 % 267 290 124
30 % 267 290 131
Entity #8 | Chains: G
16S ribosomal RNA rna, length: 1514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: H
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 303 332 30
95 % 304 334 47
90 % 304 334 52
70 % 304 334 61
50 % 386 530 29
40 % 386 536 34
30 % 386 536 38

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures