Sequence Similarity Clusters for the Entities in PDB 5ZEP

Entity #1 | Chains: a
16S rRNA rna, length: 1528 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: o
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12089
95 % 5 8 11736
90 % 5 8 11577
70 % 5 9 9514
50 % 409 561 23
40 % 409 561 30
30 % 409 561 34
Entity #11 | Chains: q
30S ribosomal protein S17 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10501
95 % 5 8 11544
90 % 5 8 11413
70 % 5 8 10930
50 % 5 8 10067
40 % 5 8 9543
30 % 5 8 8834
Entity #12 | Chains: r
30S ribosomal protein S18 2 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16477
95 % 3 6 14534
90 % 3 7 12652
70 % 3 7 12014
50 % 3 7 10968
40 % 3 7 10912
30 % 3 7 9543
Entity #13 | Chains: s
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12779
95 % 4 8 10970
90 % 4 8 10852
70 % 6 16 5088
50 % 399 550 24
40 % 399 550 32
30 % 399 550 36
Entity #14 | Chains: t
30S ribosomal protein S20 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10375
95 % 5 8 11302
90 % 5 8 11183
70 % 5 9 9360
50 % 5 9 8727
40 % 11 24 3138
30 % 95 212 234
Entity #15 | Chains: n
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15885
95 % 3 6 16769
90 % 3 6 16472
70 % 309 341 60
50 % 315 355 89
40 % 315 355 103
30 % 315 355 103
Entity #16 | Chains: b
30S ribosomal protein S2 protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 16478
95 % 4 6 14535
90 % 4 6 14281
70 % 4 6 13514
50 % 401 541 30
40 % 401 547 36
30 % 401 547 39
Entity #17 | Chains: d
30S ribosomal protein S4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11960
95 % 5 8 11553
90 % 5 8 10682
70 % 5 9 9204
50 % 318 360 88
40 % 402 555 31
30 % 402 555 35
Entity #18 | Chains: f
30S ribosomal protein S6 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9911
95 % 5 8 10580
90 % 5 9 9428
70 % 5 9 9149
50 % 5 9 8499
40 % 5 9 8173
30 % 13 28 2517
Entity #19 | Chains: m
30S ribosomal protein S13 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10164
95 % 5 8 10999
90 % 5 8 10880
70 % 5 9 9267
50 % 401 549 27
40 % 403 552 35
30 % 403 552 38
Entity #2 | Chains: c
30S ribosomal protein S3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12702
95 % 4 7 12708
90 % 4 8 11924
70 % 4 8 10124
50 % 4 8 9390
40 % 4 8 8974
30 % 4 8 8349
Entity #20 | Chains: p
30S ribosomal protein S16 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12784
95 % 4 7 12896
90 % 4 7 12728
70 % 4 8 10471
50 % 4 8 9687
40 % 4 8 9238
30 % 4 8 8574
Entity #21 | Chains: u
Conserved domain protein protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 9 8992
95 % 5 9 9770
90 % 5 9 9700
70 % 5 9 9725
50 % 5 9 8740
40 % 5 9 8375
30 % 5 9 7828
Entity #22 | Chains: w
E-tRNAfMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: x
Ribosome hibernation promoting factor protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 49147
95 % 2 2 35805
90 % 2 2 34266
70 % 2 2 30546
50 % 2 2 26699
40 % 2 2 24318
30 % 2 2 20413
Entity #24 | Chains: 0
bS1 protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #25 | Chains: C
50S ribosomal protein L2 protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11704
95 % 5 8 11095
90 % 5 10 8774
70 % 5 10 8527
50 % 330 474 45
40 % 330 474 57
30 % 330 474 60
Entity #26 | Chains: D
50S ribosomal protein L3 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11039
95 % 5 8 12121
90 % 5 8 11951
70 % 5 10 8847
50 % 341 480 44
40 % 341 484 53
30 % 341 485 56
Entity #27 | Chains: E
50S ribosomal protein L4 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10378
95 % 5 8 11306
90 % 5 8 11188
70 % 5 10 8940
50 % 5 10 8315
40 % 222 241 136
30 % 5 10 7480
Entity #28 | Chains: F
50S ribosomal protein L5 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9914
95 % 5 8 10583
90 % 5 8 10483
70 % 5 10 8558
50 % 331 469 48
40 % 331 469 62
30 % 331 469 64
Entity #29 | Chains: G
50S ribosomal protein L6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9720
95 % 5 8 10297
90 % 5 8 10199
70 % 5 10 8015
50 % 236 271 106
40 % 329 475 55
30 % 329 479 55
Entity #3 | Chains: e
30S ribosomal protein S5 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13080
95 % 4 7 13461
90 % 4 7 13276
70 % 4 8 11503
50 % 4 8 10528
40 % 4 8 9929
30 % 4 8 9195
Entity #30 | Chains: H
50S ribosomal protein L9 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10078
95 % 5 8 10858
90 % 5 8 10742
70 % 5 10 8939
50 % 5 10 8314
40 % 5 10 7999
30 % 252 372 94
Entity #31 | Chains: I
50S ribosomal protein L10 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 17428
95 % 4 6 16075
90 % 4 6 15770
70 % 4 6 14811
50 % 4 6 13393
40 % 4 6 12481
30 % 31 75 838
Entity #32 | Chains: J
50S ribosomal protein L11 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 12872
95 % 5 7 12661
90 % 5 7 13236
70 % 5 7 11926
50 % 127 266 159
40 % 127 266 170
30 % 129 274 170
Entity #33 | Chains: K
50S ribosomal protein L13 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12204
95 % 5 8 11936
90 % 5 8 11766
70 % 5 10 8753
50 % 120 244 184
40 % 309 447 70
30 % 309 447 75
Entity #34 | Chains: L
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9941
95 % 5 10 8455
90 % 5 10 8397
70 % 31 51 1343
50 % 336 487 36
40 % 336 487 47
30 % 336 487 50
Entity #35 | Chains: M
50S ribosomal protein L15 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9940
95 % 5 8 12130
90 % 5 8 10415
70 % 5 10 8146
50 % 213 243 118
40 % 331 469 64
30 % 331 469 66
Entity #36 | Chains: N
50S ribosomal protein L16 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11406
95 % 5 8 10614
90 % 5 10 8804
70 % 5 10 8559
50 % 327 472 47
40 % 327 472 59
30 % 327 472 62
Entity #37 | Chains: O
50S ribosomal protein L17 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13187
95 % 4 7 13401
90 % 4 7 12415
70 % 4 9 9424
50 % 4 9 8788
40 % 4 9 8425
30 % 4 9 7864
Entity #38 | Chains: P
50S ribosomal protein L18 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10797
95 % 5 8 11512
90 % 5 8 11382
70 % 5 10 8783
50 % 315 454 54
40 % 10 19 4137
30 % 10 19 4048
Entity #39 | Chains: Q
50S ribosomal protein L19 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10480
95 % 5 8 11511
90 % 5 10 8709
70 % 5 10 8461
50 % 123 248 182
40 % 123 248 195
30 % 123 248 203
Entity #4 | Chains: g
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11055
95 % 6 10 8237
90 % 6 10 8021
70 % 6 10 7945
50 % 383 479 51
40 % 383 485 67
30 % 383 485 70
Entity #40 | Chains: R
50S ribosomal protein L20 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9942
95 % 5 8 10621
90 % 5 10 8398
70 % 5 10 8147
50 % 336 474 42
40 % 336 482 49
30 % 336 482 51
Entity #41 | Chains: S
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9806
95 % 5 8 10434
90 % 5 8 10336
70 % 5 10 8347
50 % 5 10 7645
40 % 335 469 63
30 % 335 469 65
Entity #42 | Chains: T
50S ribosomal protein L22 protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13192
95 % 4 7 12607
90 % 4 7 12425
70 % 4 7 11831
50 % 4 7 10803
40 % 4 7 10164
30 % 4 7 9410
Entity #43 | Chains: U
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12194
95 % 5 8 11917
90 % 5 8 11745
70 % 5 10 8706
50 % 5 10 7556
40 % 329 471 61
30 % 329 471 63
Entity #44 | Chains: V
50S ribosomal protein L24 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9793
95 % 5 8 10404
90 % 5 8 10308
70 % 5 10 8132
50 % 307 447 53
40 % 307 449 69
30 % 307 449 74
Entity #45 | Chains: W
50S ribosomal protein L25 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13193
95 % 4 7 12608
90 % 4 7 12426
70 % 4 9 9068
50 % 4 9 8420
40 % 4 9 8108
30 % 4 9 7576
Entity #46 | Chains: X
50S ribosomal protein L27 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13677
95 % 4 7 13555
90 % 4 9 9750
70 % 4 9 9598
50 % 335 471 46
40 % 335 471 58
30 % 335 471 61
Entity #47 | Chains: Y
50S ribosomal protein L28 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17235
95 % 3 6 15591
90 % 3 6 15211
70 % 3 8 10906
50 % 3 8 10111
40 % 3 8 9527
30 % 16 28 2672
Entity #48 | Chains: Z
50S ribosomal protein L29 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 13678
95 % 4 7 12643
90 % 4 7 13365
70 % 4 9 9098
50 % 25 40 1754
40 % 25 40 1803
30 % 25 40 1821
Entity #49 | Chains: v
50S ribosomal protein L30 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9792
95 % 5 8 10403
90 % 5 8 10387
70 % 5 10 8830
50 % 5 10 8212
40 % 5 10 7910
30 % 5 10 7398
Entity #5 | Chains: h
30S ribosomal protein S8 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12367
95 % 5 9 9472
90 % 5 9 9370
70 % 5 9 9559
50 % 320 364 84
40 % 405 560 29
30 % 522 760 21
Entity #50 | Chains: y
50S ribosomal protein L31 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 14751
95 % 3 6 15230
90 % 3 6 14975
70 % 3 8 10838
50 % 3 8 10001
40 % 3 8 9483
30 % 3 8 8785
Entity #51 | Chains: z
50S ribosomal protein L32 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11947
95 % 5 8 11527
90 % 5 8 11395
70 % 5 10 8571
50 % 5 10 7992
40 % 5 10 7702
30 % 5 10 7219
Entity #52 | Chains: 1
50S ribosomal protein L33 1 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18592
95 % 3 5 17885
90 % 3 7 12907
70 % 3 7 12252
50 % 182 207 145
40 % 297 430 79
30 % 297 430 86
Entity #53 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11863
95 % 5 8 11378
90 % 5 8 11256
70 % 5 10 8489
50 % 335 468 49
40 % 335 468 65
30 % 335 468 67
Entity #54 | Chains: 3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12495
95 % 5 8 12351
90 % 5 8 12183
70 % 5 10 7978
50 % 5 10 7513
40 % 221 240 138
30 % 221 240 145
Entity #55 | Chains: 4
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10148
95 % 5 8 10968
90 % 5 10 9281
70 % 175 212 135
50 % 263 408 77
40 % 263 408 93
30 % 263 408 93
Entity #56 | Chains: 5
Uncharacterized protein protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11460
95 % 5 8 10716
90 % 5 8 10602
70 % 5 8 10237
50 % 5 8 9472
40 % 5 8 9053
30 % 5 8 8411
Entity #57 | Chains: B
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: A
23S rRNA rna, length: 3120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: i
30S ribosomal protein S9 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12703
95 % 4 7 12571
90 % 4 7 12536
70 % 4 8 9877
50 % 4 8 9391
40 % 4 8 8975
30 % 4 8 8191
Entity #7 | Chains: j
30S ribosomal protein S10 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12088
95 % 5 9 9913
90 % 5 9 9831
70 % 11 22 3416
50 % 404 549 26
40 % 404 549 34
30 % 427 586 32
Entity #8 | Chains: k
30S ribosomal protein S11 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 7 12860
95 % 4 7 13029
90 % 4 8 11184
70 % 4 8 10730
50 % 395 543 29
40 % 395 543 38
30 % 395 543 41
Entity #9 | Chains: l
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 10971
95 % 5 9 10089
90 % 5 9 10005
70 % 394 547 17
50 % 400 565 22
40 % 400 565 28
30 % 400 565 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures