Sequence Similarity Clusters for the Entities in PDB 5ZBU

Entity #1 | Chains: B,C
Ubiquitin-conjugating enzyme E2 D2 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29991
95 % 38 46 890 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 48 57 665
70 % 53 62 651
50 % 58 67 577
40 % 91 110 341
30 % 150 174 205
Entity #2 | Chains: A,D
E3 ubiquitin-protein ligase RNF13 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22617
95 % 2 2 19280 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 18866
70 % 2 2 19284
50 % 2 2 15706
40 % 2 2 16162
30 % 2 2 13228
Entity #3 | Chains: E
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 268 388 4
95 % 336 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 345 499 6
70 % 386 549 9
50 % 392 564 11
40 % 392 568 14
30 % 402 584 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures