Sequence Similarity Clusters for the Entities in PDB 5Z3O

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 80 205
95 % 238 250 42
90 % 246 258 43
70 % 249 261 51
50 % 258 271 79
40 % 258 271 95
30 % 258 271 95
Entity #2 | Chains: B,F
Histone H4 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 253 23
95 % 261 275 34
90 % 270 284 36
70 % 269 283 46
50 % 269 283 76
40 % 269 283 92
30 % 269 283 92
Entity #3 | Chains: C,G
Histone H2A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 128 112
95 % 240 255 38
90 % 223 238 66
70 % 238 253 54
50 % 245 260 85
40 % 245 260 100
30 % 245 260 100
Entity #4 | Chains: D,H
Histone H2B 1.1 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 91 194
95 % 59 70 373
90 % 231 248 53
70 % 242 259 53
50 % 249 266 82
40 % 249 266 99
30 % 249 266 99
Entity #5 | Chains: I
DNA (167-MER) dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (167-MER) dna, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: O
Transcription regulatory protein SNF2 protein, length: 735 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 9298
95 % 4 9 9783
90 % 4 9 9457
70 % 4 9 9386
50 % 5 10 7919
40 % 5 10 7268
30 % 5 10 7180

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures