5YRS

X-ray Snapshot of HIV-1 Protease in Action: Observation of Tetrahedral Intermediate and Its SIHB with Catalytic Aspartate


Sequence Similarity Clusters for the Entities in PDB 5YRS

Entity #1 | Chains: A
PROTEASE protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 32445
95 % 348 611 3
90 % 409 716 2
70 % 447 766 5
50 % 453 792 6
40 % 453 792 7
30 % 453 792 12
Entity #2 | Chains: B
PROTEASE protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 3106
95 % 349 611 3
90 % 410 716 2
70 % 448 766 5
50 % 454 792 6
40 % 454 792 7
30 % 454 792 12
Entity #3 | Chains: X
RT-RH oligopeprtide protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures