Sequence Similarity Clusters for the Entities in PDB 5YFI

Entity #1 | Chains: L
Light chain of Fab fragment protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29146
95 % 1 3 24690 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 30 2061
70 % 308 2248 2
50 % 386 2841 2
40 % 386 2841 2
30 % 791 5760 1
Entity #2 | Chains: H
Heavy chain of Fab fragment protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29358
95 % 1 3 24837 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 24076
70 % 377 2745 1
50 % 400 2877 1
40 % 400 2877 1
30 % 792 5760 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures