Sequence Similarity Clusters for the Entities in PDB 5Y8X

Entity #1 | Chains: A
Gamma glutamyl transpeptidase protein, length: 398 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41096
95 % 2 5 18310 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 5 17833
70 % 2 5 16756
50 % 5 10 6532
40 % 5 10 6323
30 % 5 10 5996
Entity #2 | Chains: B
Gamma glutamyl transpeptidase protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 36419
95 % 2 5 18467 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 5 18081
70 % 5 10 6831
50 % 5 10 6494
40 % 5 10 6287
30 % 16 35 1395

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures