Sequence Similarity Clusters for the Entities in PDB 5XM1

Entity #1 | Chains: A,E
Histone H3mm7 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36554
95 % 140 230 62 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 144 238 64
70 % 147 241 70
50 % 149 250 91
40 % 149 250 106
30 % 149 250 108
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 132 233 40
95 % 149 255 39 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 154 264 37
70 % 155 263 48
50 % 155 263 85
40 % 155 263 101
30 % 155 263 102
Entity #3 | Chains: C,G
Histone H2A type 1-B protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 87 184
95 % 127 234 60 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 126 220 69
70 % 128 226 76
50 % 128 226 100
40 % 128 226 118
30 % 128 226 124
Entity #4 | Chains: D,H
Histone H2B type 3-A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6938
95 % 6 6 7547 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 130 225 68
70 % 137 236 72
50 % 141 242 95
40 % 141 242 111
30 % 141 242 114
Entity #5 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures