Sequence Similarity Clusters for the Entities in PDB 5XJT

Entity #1 | Chains: 2
Gem-associated protein 2 protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 36584
95 % 2 3 29726 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 28653
70 % 2 3 25847
50 % 2 3 22666
40 % 2 3 20746
30 % 2 3 18593
Entity #2 | Chains: A
Small nuclear ribonucleoprotein Sm D1 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 12986
95 % 3 7 8133 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 7 7788
70 % 3 7 7591
50 % 3 7 7400
40 % 3 7 6898
30 % 3 7 6695
Entity #3 | Chains: B
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 57351
95 % 6 30 650 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.8
PDBFlex
90 % 6 30 678
70 % 6 30 697
50 % 6 58 455
40 % 6 58 481
30 % 6 58 502
Entity #4 | Chains: E
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 492
95 % 5 29 665 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.9
PDBFlex
90 % 5 29 694
70 % 5 29 721
50 % 5 29 760
40 % 5 29 789
30 % 5 29 835
Entity #5 | Chains: F
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 28 508
95 % 5 28 686 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.9
PDBFlex
90 % 5 28 715
70 % 5 28 754
50 % 5 28 792
40 % 5 28 825
30 % 5 28 866
Entity #6 | Chains: G
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 482
95 % 5 29 656 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 5 29 685
70 % 5 29 710
50 % 5 57 460
40 % 5 58 480
30 % 5 58 501
Entity #7 | Chains: M
Survival motor neuron protein protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 15167
95 % 4 6 15834
90 % 4 6 15556
70 % 4 6 14613
50 % 4 6 13232
40 % 4 6 12341
30 % 4 6 11323

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures