Sequence Similarity Clusters for the Entities in PDB 5XI5

Entity #1 | Chains: A,C
Tubulin alpha chain protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 118 166 43
95 % 122 260 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 122 261 15
70 % 124 277 13
50 % 124 277 17
40 % 248 554 3
30 % 251 565 8
Entity #2 | Chains: B,D
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 112 171
95 % 122 256 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 123 269 8
70 % 125 277 12
50 % 125 277 16
40 % 249 554 3
30 % 252 565 8
Entity #3 | Chains: E
Stathmin-4 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 10539
95 % 7 8 11619 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 8 11471
70 % 7 8 10997
50 % 7 8 10114
40 % 7 8 9586
30 % 7 8 8893
Entity #4 | Chains: F
Tubulin tyrosine ligase protein, length: 384 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 104 404
95 % 99 104 535 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 0.8
PDBFlex
90 % 99 104 558
70 % 101 107 558
50 % 101 107 601
40 % 101 107 638
30 % 101 107 656

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures