Sequence Similarity Clusters for the Entities in PDB 5XEQ

Entity #1 | Chains: A
Neuroligin-2 protein, length: 576 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 79623
95 % 2 3 8001 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 3 7913
70 % 8 12 2355
50 % 8 12 2401
40 % 8 12 2423
30 % 369 378 79
Entity #2 | Chains: B
MAM domain-containing glycosylphosphatidylinositol anchor protein 1 protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79622
95 % 1 1 50478
90 % 1 1 47840
70 % 1 1 41876
50 % 1 1 36192
40 % 1 1 32702
30 % 1 1 28907

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures