Sequence Similarity Clusters for the Entities in PDB 5XDN

Entity #1 | Chains: A,B
Voltage-dependent anion-selective channel protein 1 protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5733
95 % 6 11 4647 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 6 11 4718
70 % 7 12 4612
50 % 7 12 4502
40 % 7 12 4401
30 % 7 12 4284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C69 1 X VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 10090
2 3EMN 1 X Voltage-dependent anion-selective channel protein 1 sequence database residues 14-296 10090
3 6G6U 1 A, B Voltage-dependent anion-selective channel protein 1 9606
4 4BUM 1 X VOLTAGE-DEPENDENT ANION CHANNEL 2 7955
5 6G73 1 A, B, C, D Voltage-dependent anion-selective channel protein 1 C-terminal His6-tag 9606
6 5XDO 1 A, B Voltage-dependent anion-selective channel protein 1 9606
7 5XDN 1 A, B Voltage-dependent anion-selective channel protein 1 9606
8 2JK4 1 A VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 RESIDUES 2-283 9606
9 6TIQ 1 A Voltage-dependent anion-selective channel protein 1 9606
10 6TIR 1 A Voltage-dependent anion-selective channel protein 1 9606
11 5JDP 1 A Voltage-dependent anion-selective channel protein 1 SAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTVKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQARS 9606
12 2K4T 1 A Voltage-dependent anion-selective channel protein 1 9606