Sequence Similarity Clusters for the Entities in PDB 5X2M

Entity #1 | Chains: A,C
Taste receptor, type 1, member 2a protein, length: 461 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7737
95 % 1 5 8608 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 5 8540
70 % 1 5 8342
50 % 1 5 7805
40 % 1 5 7521
30 % 1 10 3729
Entity #2 | Chains: B,D
Taste receptor, type 1, member 3 protein, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8229
95 % 1 5 8495 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 1 5 8417
70 % 1 5 8233
50 % 1 5 7719
40 % 1 5 7443
30 % 2 10 3729
Entity #3 | Chains: H,J
Fab16A Heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7569
95 % 1 5 8318 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 2 17 1068
70 % 812 2928 1
50 % 865 3079 1
40 % 865 3079 1
30 % 1711 6153 1
Entity #4 | Chains: K,L
Fab16A Light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7773
95 % 10 40 947 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 22 120 153
70 % 655 2391 2
50 % 833 3030 2
40 % 833 3030 2
30 % 1712 6153 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures