Sequence Similarity Clusters for the Entities in PDB 5WS6

Entity #1 | Chains: A,a
Photosystem II D1 protein protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 1776
95 % 12 44 619 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 0.9
PDBFlex
90 % 12 44 649
70 % 12 53 533
50 % 12 53 562
40 % 12 53 600
30 % 12 53 623
Entity #10 | Chains: K,k
Photosystem II reaction center protein K protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 30 791
95 % 12 30 1066 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.6
PDBFlex
90 % 12 32 992
70 % 12 35 881
50 % 12 34 986
40 % 12 34 1031
30 % 12 34 1072
Entity #11 | Chains: L,l
Photosystem II reaction center protein L protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 485
95 % 12 42 651 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.4
PDBFlex
90 % 12 42 683
70 % 12 51 564
50 % 12 51 597
40 % 12 51 630
30 % 12 51 663
Entity #12 | Chains: M,m
Photosystem II reaction center protein M protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 525
95 % 12 41 675 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.5
PDBFlex
90 % 12 41 706
70 % 12 41 744
50 % 12 45 717
40 % 12 45 748
30 % 12 45 787
Entity #13 | Chains: O,o
Photosystem II manganese-stabilizing polypeptide protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 481
95 % 12 42 653 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 12 42 685
70 % 11 24 1387
50 % 11 24 1409
40 % 12 49 683
30 % 12 49 718
Entity #14 | Chains: T,t
Photosystem II reaction center protein T protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 482
95 % 12 42 649 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 12 42 678
70 % 12 42 719
50 % 12 51 596
40 % 12 51 629
30 % 12 51 662
Entity #15 | Chains: U,u
Photosystem II 12 kDa extrinsic protein protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 30 790
95 % 12 30 1059 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 12 30 1104
70 % 12 30 1121
50 % 12 30 1141
40 % 12 30 1189
30 % 12 30 1232
Entity #16 | Chains: V,v
Cytochrome c-550 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 33 676
95 % 13 33 928 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 13 33 967
70 % 13 33 1003
50 % 13 38 883
40 % 14 39 901
30 % 14 39 939
Entity #17 | Chains: X,x
Photosystem II reaction center protein X protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 39 531
95 % 12 39 721 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 12 39 753
70 % 12 39 800
50 % 12 39 838
40 % 12 39 875
30 % 12 39 917
Entity #18 | Chains: Y,y
Photosystem II reaction center protein Ycf12 protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 923
95 % 12 25 1277 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 12 25 1313
70 % 12 25 1344
50 % 12 25 1374
40 % 12 25 1416
30 % 12 25 1448
Entity #19 | Chains: Z,z
Photosystem II reaction center protein Z protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 478
95 % 12 42 648 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 12 42 679
70 % 12 42 721
50 % 12 46 703
40 % 12 47 713
30 % 12 47 752
Entity #2 | Chains: B,b
Photosystem II CP47 reaction center protein protein, length: 505 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 43 464
95 % 12 43 631 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 12 43 662
70 % 12 53 532
50 % 12 53 563
40 % 12 53 599
30 % 12 53 622
Entity #20 | Chains: R
Photosystem II protein Y protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 3372
95 % 7 13 4082 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 13 4151
70 % 7 13 4152
50 % 7 14 3567
40 % 7 14 3552
30 % 7 14 3469
Entity #3 | Chains: C,c
Photosystem II CP43 chlorophyll protein protein, length: 455 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 43 460
95 % 12 43 630 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 12 43 661
70 % 12 53 530
50 % 12 53 559
40 % 12 53 596
30 % 12 53 619
Entity #4 | Chains: D,d
Photosystem II D2 protein protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 42 477
95 % 12 44 620 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.7
PDBFlex
90 % 12 48 579
70 % 12 53 536
50 % 12 53 569
40 % 12 53 603
30 % 12 53 628
Entity #5 | Chains: E,e
Cytochrome b559 subunit alpha protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 44 456
95 % 12 44 617 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 12 44 647
70 % 12 49 593
50 % 12 53 560
40 % 12 53 597
30 % 12 53 620
Entity #6 | Chains: F,f
Cytochrome b559 subunit beta protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 31 724
95 % 7 31 995 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 7 31 1035
70 % 7 31 1052
50 % 7 39 809
40 % 7 39 847
30 % 7 39 886
Entity #7 | Chains: H,h
Photosystem II reaction center protein H protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 486
95 % 12 42 660 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.7
PDBFlex
90 % 12 42 691
70 % 12 42 732
50 % 12 47 666
40 % 12 47 694
30 % 12 47 738
Entity #8 | Chains: I,i
Photosystem II reaction center protein I protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 487
95 % 12 42 661 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 12 42 692
70 % 12 50 578
50 % 12 50 611
40 % 12 50 642
30 % 12 50 673
Entity #9 | Chains: J,j
Photosystem II reaction center protein J protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 42 476
95 % 12 42 650 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 12 42 682
70 % 12 45 675
50 % 12 49 638
40 % 12 49 666
30 % 12 49 702

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures