Sequence Similarity Clusters for the Entities in PDB 5WNQ

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 333 36
95 % 184 334 59 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 184 334 64
70 % 184 334 75
50 % 214 549 26
40 % 214 549 34
30 % 214 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 33
95 % 184 335 53 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 184 335 61
70 % 184 335 73
50 % 213 543 29
40 % 213 543 38
30 % 213 543 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 55 779
95 % 184 342 47 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 184 342 52
70 % 214 547 17
50 % 214 565 22
40 % 214 565 28
30 % 214 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 336 30
95 % 184 336 52 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 184 336 57
70 % 184 336 69
50 % 216 549 27
40 % 216 552 35
30 % 216 552 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 35
95 % 184 334 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 184 334 62
70 % 184 355 55
50 % 184 355 89
40 % 184 355 104
30 % 184 355 103
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 338 29
95 % 188 343 44 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 188 343 48
70 % 188 343 59
50 % 220 561 23
40 % 220 561 30
30 % 220 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 330 37
95 % 184 335 55 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 184 335 59
70 % 184 335 70
50 % 184 335 94
40 % 184 335 111
30 % 184 335 113
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 101 332
95 % 183 328 60 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 184 332 65
70 % 184 332 76
50 % 184 332 96
40 % 184 332 113
30 % 184 332 116
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 47 711
95 % 26 55 779 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 26 55 808
70 % 26 55 844
50 % 26 55 879
40 % 26 55 911
30 % 26 55 956
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 45 746
95 % 20 45 1015 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 45 1061
70 % 185 338 64
50 % 214 550 25
40 % 214 550 33
30 % 214 550 37
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 32
95 % 184 336 49 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 184 336 55
70 % 184 336 66
50 % 213 541 30
40 % 213 547 36
30 % 213 547 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 278 48
95 % 184 334 58 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 184 334 63
70 % 184 334 74
50 % 184 334 95
40 % 184 334 112
30 % 184 334 114
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 32 1090
95 % 17 32 1474 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 17 32 1507
70 % 17 32 1541
50 % 17 32 1576
40 % 17 32 1623
30 % 17 32 1652
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 56 564
95 % 26 56 768 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 26 56 795
70 % 26 56 830
50 % 49 171 289
40 % 49 171 299
30 % 49 177 309
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 328 38
95 % 184 336 50 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 184 336 56
70 % 184 336 67
50 % 213 525 33
40 % 213 555 31
30 % 213 555 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 34
95 % 184 335 54 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 184 335 58
70 % 184 335 71
50 % 214 545 28
40 % 214 545 37
30 % 214 545 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 340 26
95 % 194 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 194 348 45
70 % 194 348 57
50 % 194 348 90
40 % 194 348 106
30 % 194 348 106
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 339 27
95 % 185 340 48 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 185 340 54
70 % 185 338 65
50 % 214 479 52
40 % 214 485 68
30 % 214 485 70
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 31
95 % 184 335 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 185 339 53
70 % 185 339 62
50 % 186 364 86
40 % 216 560 29
30 % 246 763 22
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 234 63
95 % 184 335 56 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 184 335 60
70 % 184 335 72
50 % 213 538 31
40 % 213 538 39
30 % 213 538 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4YBB 3 AC, BC 30S ribosomal protein S3 562
2 5FDV 35 1c, 2c 30S ribosomal protein S3 274
3 5J7L 3 AC, BC 30S ribosomal protein S3 562
4 5FDU 34 1c, 2c 30S ribosomal protein S3 274
5 6I7V 7 AC, BC 30S ribosomal protein S3 562
6 5JC9 3 AC, BC 30S ribosomal protein S3 562
7 5J8A 3 AC, BC 30S ribosomal protein S3 562
8 5J5B 3 AC, BC 30S ribosomal protein S3 562
9 4U27 3 AC, CC 30S ribosomal protein S3 562
10 4JYA 3 C 30S ribosomal protein S3 274
11 4KHP 3 C 30S Ribosomal protein S3 274
12 4U26 3 AC, CC 30S ribosomal protein S3 562
13 4X64 3 C 30S ribosomal protein S3 274
14 5IT8 3 AC, BC 30S ribosomal protein S3 562
15 4V9D 3 AC, BC 30S ribosomal protein S3 562
16 4V9H 16 AC 30S ribosomal protein S3 274
17 5J91 3 AC, BC 30S ribosomal protein S3 562
18 5WNT 3 C RIBOSOMAL PROTEIN S3 274
19 5J88 3 AC, BC 30S ribosomal protein S3 562
20 4U24 3 AC, CC 30S ribosomal protein S3 562
21 5WNV 3 C 30S ribosomal protein S3 274
22 6MPF 3 C 30S ribosomal protein S3 274
23 4WF1 3 AC, CC 30S ribosomal protein S3 562
24 4U25 3 AC, CC 30S ribosomal protein S3 562
25 4WWW 34 QC, XC 30S ribosomal protein S3 562
26 4V7T 3 AC, CC 30S ribosomal protein S3 562
27 6FKR 34 1c, 2c 30S ribosomal protein S3 274
28 5IWA 2 C 30S ribosomal protein S3 274
29 4V7U 3 AC, CC 30S ribosomal protein S3 562
30 4JV5 3 C 30S ribosomal protein S3 274
31 4GKK 3 C 30S ribosomal protein S3 274
32 4V7V 3 AC, CC 30S ribosomal protein S3 562
33 4X65 3 C 30S ribosomal protein S3 274
34 4GKJ 3 C 30S ribosomal protein S3 274
35 4V7S 3 AC, CC 30S ribosomal protein S3 562
36 5WNP 3 C 30S ribosomal protein S3 274
37 6CAP 3 C 30S ribosomal protein S3 274
38 4U20 3 AC, CC 30S ribosomal protein S3 562
39 4U1V 3 AC, CC 30S ribosomal protein S3 562
40 4X62 3 C 30S ribosomal protein S3 274
41 5WNU 3 C 30S ribosomal protein S3 274
42 5F8K 34 1c, 2c 30S ribosomal protein S3 274
43 6CAQ 3 C 30S ribosomal protein S3 274
44 4K0K 3 C 30S ribosomal protein S3 274
45 4X66 3 C 30S ribosomal protein S3 274
46 4U1U 3 AC, CC 30S ribosomal protein S3 562
47 4ZER 34 1c, 2c 30S ribosomal protein S3 274
48 4WT8 24 BC 30S ribosomal protein S3 274
49 5WNQ 3 C 30S ribosomal protein S3 274
50 6CZR 34 1c, 2c 30S ribosomal protein S3 274
51 4V9I 3 AC, CC 30S Ribosomal protein S3 274
52 5WNR 3 C 30S ribosomal protein S3 274
53 6CAO 3 C 30S ribosomal protein S3 274
54 4V84 3 AC, CC 30S ribosomal protein S3 274
55 5WNS 3 C 30S ribosomal protein S3 274
56 4V9Q 33 BC, DC 30S ribosomal protein S3 274
57 4YHH 3 C 30S ribosomal protein S3 274
58 4V9N 6 AC, CC 30S ribosomal protein S3 274
59 4V83 3 AC, CC 30S ribosomal protein S3 274
60 4V9K 2 AC, CC 30S ribosomal protein S3 274
61 4XEJ 30 AS03, BS03 30S ribosomal protein S3 274
62 4V7P 3 AC, DC 30S ribosomal protein S3 274
63 6BY1 38 AC, BC 30S ribosomal protein S3 562
64 4V9L 2 AC, CC 30S ribosomal protein S3 274
65 4V9J 2 AC, CC 30S ribosomal protein S3 274
66 4V9M 2 AC, CC 30S ribosomal protein S3 274
67 4W29 2 AC, CC 30S ribosomal protein S3 274
68 4V49 5 AC 30S ribosomal protein S3 562
69 4V4A 3 AC 30S ribosomal protein S3 562
70 4V4G 3 AC, CC, EC, GC, IC 30S ribosomal protein S3 562
71 6SPC 3 c 30S ribosomal protein S3 287
72 6SPE 3 c 30S ribosomal protein S3 287
73 6SPF 35 c 30S ribosomal protein S3 287
74 6SPG 3 c 30S ribosomal protein S3 287
75 6S0X 33 c 30S ribosomal protein S3 1280
76 6S13 33 c 30S ribosomal protein S3 1280
77 6OUO 35 h 30S ribosomal protein S3 562
78 6OSQ 36 h 30S ribosomal protein S3 562
79 6OST 33 h 30S ribosomal protein S3 562
80 6OT3 35 h 30S ribosomal protein S3 562
81 6OSK 35 h 30S ribosomal protein S3 562
82 6ORE 37 h 30S ribosomal protein S3 562
83 6ORL 33 h 30S ribosomal protein S3 562
84 6OFX 30 H 30S ribosomal protein S3 562
85 6OG7 30 H 30S ribosomal protein S3 562
86 6O9J 33 c 30S ribosomal protein S3 562
87 6O9K 3 c 30S ribosomal protein S3 562
88 6O7K 17 h 30S ribosomal protein S3 562
89 6NQB 1 C 30S ribosomal protein S3 562
90 6Q95 3 h 30S ribosomal protein S3 274
91 6Q97 40 h 30S ribosomal protein S3 562
92 6Q9A 38 h 30S ribosomal protein S3 562
93 6HTQ 32 c 30S ribosomal protein S3 1423
94 6HRM 35 h 30S ribosomal protein S3 562
95 6HA1 33 c 30S ribosomal protein S3 1423
96 6HA8 35 c 30S ribosomal protein S3 1423
97 6H58 34 c, cc 30S ribosomal protein S3 562
98 6H4N 3 c 30S ribosomal protein S3 562
99 6DZI 3 k 30S ribosomal protein S3 1772
100 6GZX 33 C3, C4 30S ribosomal protein S3 274
101 6GZZ 33 C3, C4 30S ribosomal protein S3 274
102 6GZQ 33 C2 30S ribosomal protein S3 274
103 6GXM 36 c 30S ribosomal protein S3 562
104 6GXN 36 c 30S ribosomal protein S3 562
105 6GXO 36 c 30S ribosomal protein S3 562
106 6GXP 35 c 30S ribosomal protein S3 562
107 6GWT 36 c 30S ribosomal protein S3 562
108 6FXC 3 Ac, Bc 30S ribosomal protein S3 1280
109 6BU8 33 C 30S ribosomal protein S3 562
110 6ENU 3 c 30S ribosomal protein S3 562
111 6ENJ 33 c 30S ribosomal protein S3 562
112 6ENF 3 c 30S ribosomal protein S3 562
113 6AWB 8 F 30S ribosomal protein S3 562
114 6AWC 8 F 30S ribosomal protein S3 562
115 6AWD 7 F 30S ribosomal protein S3 562
116 5OT7 9 B 30S ribosomal protein S3 274
117 5WFK 36 c 30S ribosomal protein S3 562
118 5WFS 36 c 30S ribosomal protein S3 562
119 5WF0 36 c 30S ribosomal protein S3 562
120 5WE4 36 c 30S ribosomal protein S3 562
121 5WE6 36 c 30S ribosomal protein S3 562
122 5WDT 36 c 30S ribosomal protein S3 562
123 5O2R 37 c 30S ribosomal protein S3 562
124 5NP6 6 F 30S ribosomal protein S3 562
125 5NO4 2 C 30S ribosomal protein S3 562
126 5NJT 3 C 30S ribosomal protein S3 1423
127 5NGM 3 Ac 30S ribosomal protein S3 1280
128 5ND8 3 c 30S ribosomal protein S3 1280
129 5ND9 3 c 30S ribosomal protein S3 1280
130 5UYK 33 C 30S ribosomal protein S3 562
131 5UYL 33 C 30S ribosomal protein S3 562
132 5UYM 33 C 30S ribosomal protein S3 562
133 5UYN 33 C 30S ribosomal protein S3 562
134 5UYP 33 C 30S ribosomal protein S3 562
135 5UYQ 33 C 30S ribosomal protein S3 562
136 5UQ7 34 c 30S ribosomal protein S3 274
137 5UQ8 34 c 30S ribosomal protein S3 274
138 5MYJ 3 AC 30S ribosomal protein S3 1358
139 5MGP 34 c 30S ribosomal protein S3 562
140 5LZA 3 c 30S ribosomal protein S3 562
141 5LZB 3 c 30S ribosomal protein S3 562
142 5LZC 3 c 30S ribosomal protein S3 562
143 5LZD 3 c 30S ribosomal protein S3 562
144 5LZE 3 c 30S ribosomal protein S3 562
145 5LZF 3 c 30S ribosomal protein S3 562
146 5TCU 2 SB 30S ribosomal protein S3 1280
147 5LI0 3 c 30S ribosomal protein S3 1280
148 5A9Z 36 BG 30S ribosomal protein S3 274
149 5AA0 36 BG 30S ribosomal protein S3 274
150 3J9W 3 AC 30S ribosomal protein uS3 1423
151 4V6Y 2 AC 30S ribosomal protein S3 562
152 4V6Z 2 AC 30S ribosomal protein S3 562
153 4V70 2 AC 30S ribosomal protein S3 562
154 4V71 2 AC 30S ribosomal protein S3 562
155 4V72 2 AC 30S ribosomal protein S3 562
156 4V73 2 AC 30S ribosomal protein S3 562
157 4V74 2 AC 30S ribosomal protein S3 562
158 4V75 2 AC 30S ribosomal protein S3 562
159 4V76 2 AC 30S ribosomal protein S3 562
160 4V77 2 AC 30S ribosomal protein S3 562
161 4V78 2 AC 30S ribosomal protein S3 562
162 4V79 2 AC 30S ribosomal protein S3 562
163 4V7A 2 AC 30S ribosomal protein S3 562
164 4V6T 3 AC 30S ribosomal protein S3 562
165 4A2I 3 C 30S RIBOSOMAL PROTEIN S3 562
166 2YKR 3 C 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-207 562
167 4V5H 3 AC 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-207 562
168 4V68 14 AC 30S ribosomal protein S3 274
169 4V69 14 AC 30S ribosomal protein S3 562
170 4V4V 4 AC 30S ribosomal subunit protein S3 562
171 4V4W 4 AC 30S ribosomal subunit protein S3 562