Sequence Similarity Clusters for the Entities in PDB 5WNQ

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 333 36
95 % 184 334 58 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 184 334 63
70 % 184 334 75
50 % 214 549 26
40 % 214 549 34
30 % 214 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 33
95 % 184 335 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 184 335 61
70 % 184 335 72
50 % 213 543 29
40 % 213 543 38
30 % 213 543 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 55 781
95 % 184 342 45 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 184 342 51
70 % 214 547 17
50 % 214 565 22
40 % 214 565 28
30 % 214 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 336 31
95 % 184 336 52 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 184 336 57
70 % 184 336 69
50 % 216 549 27
40 % 216 552 35
30 % 216 552 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 35
95 % 184 334 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 184 334 64
70 % 184 341 61
50 % 184 355 90
40 % 184 355 104
30 % 184 355 106
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 338 29
95 % 188 343 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 188 343 48
70 % 188 343 58
50 % 220 561 23
40 % 220 561 30
30 % 220 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 330 37
95 % 184 335 53 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 184 335 58
70 % 184 335 70
50 % 184 335 95
40 % 184 335 111
30 % 184 335 116
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 101 331
95 % 183 328 60 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 184 332 65
70 % 184 332 76
50 % 184 332 97
40 % 184 332 113
30 % 184 332 119
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 47 717
95 % 26 55 785 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 26 55 815
70 % 26 55 850
50 % 26 55 880
40 % 26 55 915
30 % 26 55 960
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 45 746
95 % 20 45 1007 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 45 1048
70 % 185 338 63
50 % 214 550 25
40 % 214 550 33
30 % 214 550 37
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 32
95 % 184 336 48 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 184 336 55
70 % 184 336 66
50 % 213 541 30
40 % 213 547 36
30 % 213 547 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 278 48
95 % 184 334 57 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 184 334 62
70 % 184 334 74
50 % 184 334 96
40 % 184 334 112
30 % 184 334 117
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 32 1092
95 % 17 32 1473 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 17 32 1510
70 % 17 32 1549
50 % 17 32 1577
40 % 17 32 1624
30 % 17 32 1649
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 56 563
95 % 26 56 763 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 26 56 791
70 % 26 56 824
50 % 49 171 286
40 % 49 171 302
30 % 49 177 308
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 328 38
95 % 184 336 49 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 184 336 56
70 % 184 336 67
50 % 184 360 89
40 % 213 555 31
30 % 213 555 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 34
95 % 184 335 55 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 184 335 60
70 % 184 335 73
50 % 214 545 28
40 % 214 545 37
30 % 214 545 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 340 26
95 % 194 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 194 348 44
70 % 194 348 56
50 % 194 348 91
40 % 194 348 106
30 % 194 348 109
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 339 27
95 % 185 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 185 340 54
70 % 185 338 65
50 % 214 479 52
40 % 214 485 68
30 % 214 485 71
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 30
95 % 184 335 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 185 339 53
70 % 185 339 62
50 % 186 364 86
40 % 216 560 29
30 % 246 763 21
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 234 62
95 % 184 335 54 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 184 335 59
70 % 184 335 71
50 % 213 538 31
40 % 213 538 39
30 % 213 538 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5FDV 53 1u, 2u 30S ribosomal protein Thx 274
2 5FDU 52 1u, 2u 30S ribosomal protein Thx 274
3 4JYA 21 U 30S ribosomal protein THX 274
4 4KHP 21 U 30S Ribosomal protein THX 274
5 4V9H 24 AU 30S ribosomal protein THX 274
6 6MPF 21 V 30S ribosomal protein Thx 274
7 6FKR 52 1u, 2u 30S ribosomal protein Thx 274
8 5IWA 20 V 30S ribosomal protein Thx 274
9 4JV5 21 U 30S ribosomal protein THX 274
10 4GKK 21 V 30S ribosomal protein Thx 274
11 4GKJ 21 V 30S ribosomal protein Thx 274
12 6CAP 21 U 30S ribosomal protein Thx 274
13 5F8K 52 1u, 2u 30S ribosomal protein Thx 274
14 6CAQ 21 U 30S ribosomal protein Thx 274
15 4ZER 52 1u, 2u 30S ribosomal protein Thx 274
16 4WT8 21 AW, BW 30S ribosomal protein Thx 274
17 5WNQ 21 U 30S ribosomal protein Thx 274
18 6CZR 52 1u, 2u 30S ribosomal protein Thx 274
19 4V9I 21 AU, CU 30S Ribosomal protein THX 274
20 5WNR 21 U 30S ribosomal protein Thx 274
21 4V84 21 AU, CU 30S ribosomal protein Thx 274
22 5WNS 21 U 30S ribosomal protein Thx 274
23 4V9Q 51 BU, DU 30S ribosomal protein Thx 274
24 4YHH 21 V 30S ribosomal protein Thx 274
25 4V9N 24 AU, CU 30S ribosomal protein Thx 274
26 4V83 21 AU, CU 30S ribosomal protein Thx 274
27 4XEJ 48 ATHX, BTHX 30S ribosomal protein Thx 274
28 4V7P 21 AU, DU 30S ribosomal protein Thx 274
29 5UQ7 52 u 30S ribosomal protein Thx 274
30 5UQ8 52 u 30S ribosomal protein Thx 274
31 5A9Z 54 BY 30S ribosomal protein Thx 274
32 5AA0 54 BY 30S ribosomal protein Thx 274