Sequence Similarity Clusters for the Entities in PDB 5WNQ

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 333 36
95 % 184 334 59 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 184 334 64
70 % 184 334 75
50 % 214 549 26
40 % 214 549 34
30 % 214 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 33
95 % 184 335 53 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 184 335 61
70 % 184 335 73
50 % 213 543 29
40 % 213 543 38
30 % 213 543 41
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 55 779
95 % 184 342 47 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 184 342 52
70 % 214 547 17
50 % 214 565 22
40 % 214 565 28
30 % 214 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 336 30
95 % 184 336 52 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 184 336 57
70 % 184 336 69
50 % 216 549 27
40 % 216 552 35
30 % 216 552 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 35
95 % 184 334 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 184 334 62
70 % 184 355 55
50 % 184 355 89
40 % 184 355 104
30 % 184 355 103
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 338 29
95 % 188 343 44 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 188 343 48
70 % 188 343 59
50 % 220 561 23
40 % 220 561 30
30 % 220 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 330 37
95 % 184 335 55 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 184 335 59
70 % 184 335 70
50 % 184 335 94
40 % 184 335 111
30 % 184 335 113
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 101 332
95 % 183 328 60 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 184 332 65
70 % 184 332 76
50 % 184 332 96
40 % 184 332 113
30 % 184 332 116
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 47 711
95 % 26 55 779 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 26 55 808
70 % 26 55 844
50 % 26 55 879
40 % 26 55 911
30 % 26 55 956
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 45 746
95 % 20 45 1015 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 45 1061
70 % 185 338 64
50 % 214 550 25
40 % 214 550 33
30 % 214 550 37
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 32
95 % 184 336 49 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 184 336 55
70 % 184 336 66
50 % 213 541 30
40 % 213 547 36
30 % 213 547 39
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 278 48
95 % 184 334 58 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 184 334 63
70 % 184 334 74
50 % 184 334 95
40 % 184 334 112
30 % 184 334 114
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 32 1090
95 % 17 32 1474 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 17 32 1507
70 % 17 32 1541
50 % 17 32 1576
40 % 17 32 1623
30 % 17 32 1652
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 56 564
95 % 26 56 768 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 26 56 795
70 % 26 56 830
50 % 49 171 289
40 % 49 171 299
30 % 49 177 309
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 328 38
95 % 184 336 50 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 184 336 56
70 % 184 336 67
50 % 213 525 33
40 % 213 555 31
30 % 213 555 35
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 34
95 % 184 335 54 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 184 335 58
70 % 184 335 71
50 % 214 545 28
40 % 214 545 37
30 % 214 545 40
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 340 26
95 % 194 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 194 348 45
70 % 194 348 57
50 % 194 348 90
40 % 194 348 106
30 % 194 348 106
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 339 27
95 % 185 340 48 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 185 340 54
70 % 185 338 65
50 % 214 479 52
40 % 214 485 68
30 % 214 485 70
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 31
95 % 184 335 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 185 339 53
70 % 185 339 62
50 % 186 364 86
40 % 216 560 29
30 % 246 763 22
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 234 63
95 % 184 335 56 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 184 335 60
70 % 184 335 72
50 % 213 538 31
40 % 213 538 39
30 % 213 538 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5FDV 44 1l, 2l 30S ribosomal protein S12 274
2 4LFB 12 L ribosomal protein S12 274
3 5FDU 43 1l, 2l 30S ribosomal protein S12 274
4 4DR6 12 L 30S ribosomal protein S12 274
5 4LF7 12 L ribosomal protein S12 274
6 4LF8 12 L ribosomal protein S12 274
7 4DV6 12 L ribosomal protein S12 274
8 4DR5 12 L 30S ribosomal protein S12 274
9 4DR2 12 L 30S ribosomal protein S12 274
10 4LF9 12 L ribosomal protein S12 274
11 4DUY 12 L ribosomal protein S12 274
12 4DV7 12 L ribosomal protein S12 274
13 4X64 12 L 30S ribosomal protein S12 274
14 5WNT 12 L RIBOSOMAL PROTEIN S12 274
15 4DR3 12 L 30S ribosomal protein S12 274
16 4LF4 12 L ribosomal protein S12 274
17 4LF6 12 L ribosomal protein S12 274
18 5WNV 12 L 30S ribosomal protein S12 274
19 6FKR 43 1l, 2l 30S ribosomal protein S12 274
20 4DR1 12 L 30S ribosomal protein S12 274
21 4LFA 12 L ribosomal protein S12 274
22 4DV4 12 L ribosomal protein S12 274
23 4DR7 12 L 30S ribosomal protein S12 274
24 4DUZ 12 L ribosomal protein S12 274
25 4X65 12 L 30S ribosomal protein S12 274
26 4DV3 12 L ribosomal protein S12 274
27 4DV5 12 L ribosomal protein S12 274
28 4LFC 12 L ribosomal protein S12 274
29 5WNP 12 L 30S ribosomal protein S12 274
30 6CAP 12 L 30S ribosomal protein S12 274
31 4DV0 12 L ribosomal protein S12 274
32 4X62 12 L 30S ribosomal protein S12 274
33 4DV2 12 L ribosomal protein S12 274
34 4DV1 12 L ribosomal protein S12 274
35 5WNU 12 L 30S ribosomal protein S12 274
36 5F8K 43 1l, 2l 30S ribosomal protein S12 274
37 4JI5 12 L RIBOSOMAL PROTEIN S12 274
38 6CAQ 12 L 30S ribosomal protein S12 274
39 5BR8 12 L 30S ribosomal protein S12 274
40 4LF5 12 L ribosomal protein S12 274
41 4DR4 12 L 30S ribosomal protein S12 274
42 4X66 12 L 30S ribosomal protein S12 274
43 4NXM 12 L ribosomal protein S12 274
44 4ZER 43 1l, 2l 30S ribosomal protein S12 274
45 4NXN 12 L ribosomal protein S12 274
46 5WNQ 12 L 30S ribosomal protein S12 274
47 5V8I 43 1l, 2l 30S ribosomal protein S12 274
48 6CZR 43 1l, 2l 30S ribosomal protein S12 274
49 6CAR 12 L 30S ribosomal protein S12 274
50 5WNR 12 L 30S ribosomal protein S12 274
51 6CAO 12 L 30S ribosomal protein S12 274
52 5WNS 12 L 30S ribosomal protein S12 274
53 6CAS 12 L 30S ribosomal protein S12 274
54 5UQ7 43 l 30S ribosomal protein S12 274
55 5UQ8 43 l 30S ribosomal protein S12 274