Sequence Similarity Clusters for the Entities in PDB 5WNQ

Entity #1 | Chains: A
16S Ribosomal RNA rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 333 36
95 % 184 334 57 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 184 334 61
70 % 184 334 74
50 % 214 549 27
40 % 214 549 35
30 % 214 586 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 34
95 % 184 335 54 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 184 335 59
70 % 184 335 72
50 % 213 543 30
40 % 213 543 39
30 % 213 543 42
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 55 758
95 % 184 342 46 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 184 342 50
70 % 214 547 17
50 % 214 565 22
40 % 214 565 28
30 % 214 565 33
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 336 31
95 % 184 336 51 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 184 336 56
70 % 184 336 68
50 % 216 549 28
40 % 216 552 36
30 % 216 552 39
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 35
95 % 184 334 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 184 334 63
70 % 184 355 54
50 % 184 355 90
40 % 184 355 104
30 % 184 355 104
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 338 29
95 % 188 343 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 188 343 47
70 % 188 343 59
50 % 220 561 23
40 % 220 561 30
30 % 220 561 34
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 330 37
95 % 184 335 55 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 184 335 60
70 % 184 335 69
50 % 184 335 95
40 % 184 335 110
30 % 184 335 112
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 101 327
95 % 183 328 59 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 184 332 64
70 % 184 332 75
50 % 184 332 97
40 % 184 332 112
30 % 184 332 114
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 47 700
95 % 26 55 767 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 26 55 793
70 % 26 55 832
50 % 26 55 868
40 % 26 55 899
30 % 26 55 942
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 45 730
95 % 20 45 1002 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 20 45 1032
70 % 185 338 63
50 % 214 550 26
40 % 214 550 34
30 % 214 550 38
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 334 32
95 % 184 336 48 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 184 336 55
70 % 184 336 65
50 % 213 541 31
40 % 213 547 37
30 % 213 547 40
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 278 48
95 % 184 334 56 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 184 334 62
70 % 184 334 73
50 % 184 334 96
40 % 184 334 111
30 % 184 334 113
Entity #21 | Chains: U
30S ribosomal protein Thx protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 32 1075
95 % 17 32 1466 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 17 32 1489
70 % 17 32 1525
50 % 17 32 1553
40 % 17 32 1599
30 % 17 32 1628
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 56 553
95 % 26 56 751 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 26 56 780
70 % 26 56 814
50 % 49 171 276
40 % 49 171 290
30 % 49 177 299
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 328 38
95 % 184 336 49 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 184 336 54
70 % 184 336 66
50 % 213 525 34
40 % 213 555 32
30 % 213 555 36
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 33
95 % 184 335 53 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 184 335 58
70 % 184 335 71
50 % 214 545 29
40 % 214 545 38
30 % 214 545 41
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 340 26
95 % 194 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 194 348 44
70 % 194 348 57
50 % 194 348 91
40 % 194 348 105
30 % 194 348 106
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 339 27
95 % 185 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 185 340 52
70 % 185 338 64
50 % 214 479 53
40 % 214 485 68
30 % 214 485 71
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 335 30
95 % 184 335 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 185 339 51
70 % 185 339 62
50 % 186 364 86
40 % 216 560 29
30 % 246 760 22
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 234 63
95 % 184 335 52 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 184 335 57
70 % 184 335 70
50 % 213 538 32
40 % 213 538 40
30 % 213 538 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures