5W9O

MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4


Sequence Similarity Clusters for the Entities in PDB 5W9O

Entity #1 | Chains: A,D,G,J,K,L
Spike glycoprotein protein, length: 1329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 9 918
95 % 14 18 757
90 % 14 18 786
70 % 14 18 818
50 % 14 18 862
40 % 14 18 886
30 % 31 39 496
Entity #2 | Chains: B,E,H
G4 VH protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 2246
95 % 9 10 2905
90 % 10 11 2863
70 % 3006 3060 1
50 % 3191 3247 1
40 % 3192 3248 1
30 % 6357 6480 1
Entity #3 | Chains: C,F,I
G4 VL protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 2304
95 % 19 20 1466
90 % 114 120 159
70 % 2436 2488 2
50 % 3124 3185 2
40 % 3124 3185 2
30 % 6358 6480 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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