Sequence Similarity Clusters for the Entities in PDB 5W6A

Entity #1 | Chains: A,C
HLA class I histocompatibility antigen, Cw-6 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12512
95 % 1 9 5967 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 58 236 147
70 % 115 817 5
50 % 116 831 8
40 % 119 876 9
30 % 119 900 12
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 710 2
95 % 122 758 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 123 777 3
70 % 129 807 6
50 % 139 1104 4
40 % 139 1104 5
30 % 139 1104 9
Entity #3 | Chains: E,F
ALA-ARG-THR-GLU-LEU-TYR-ARG-SER-LEU protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures