Sequence Similarity Clusters for the Entities in PDB 5W1W

Entity #1 | Chains: A,F,K,P
HLA class I histocompatibility antigen, alpha chain E protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 2643
95 % 12 16 1525 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 12 16 1546
70 % 773 822 6
50 % 775 827 8
40 % 818 871 9
30 % 835 895 12
Entity #2 | Chains: B,G,L,Q
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 654 708 2
95 % 701 757 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 717 773 3
70 % 995 1076 4
50 % 1013 1100 4
40 % 1013 1100 4
30 % 1013 1100 7
Entity #3 | Chains: C,H,M,R
leader peptide of HLA class I histocompatibility antigen, A alpha chain protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,I,N,S
GF4 T cell receptor alpha chain protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10496
95 % 1 2 10780 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 5 5749
70 % 146 166 196
50 % 331 394 78
40 % 331 394 93
30 % 331 394 93
Entity #5 | Chains: E,J,O,T
GF4 T cell receptor beta chain protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10495
95 % 1 2 10779 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 13 16 2514
70 % 322 377 43
50 % 338 403 66
40 % 338 403 84
30 % 338 403 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures