Sequence Similarity Clusters for the Entities in PDB 5W1V

Entity #1 | Chains: A,F,K,P
HLA class I histocompatibility antigen, alpha chain E protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 2643
95 % 14 16 1525 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 14 16 1546
70 % 803 822 6
50 % 805 827 8
40 % 848 871 9
30 % 867 895 12
Entity #2 | Chains: B,G,L,Q
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 681 708 2
95 % 729 757 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 745 773 3
70 % 1043 1076 4
50 % 1065 1100 4
40 % 1065 1100 4
30 % 1065 1100 7
Entity #3 | Chains: C,H,M,R
VMAPRTLIL peptide from CMV gpUL40 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,I,N,S
GF4 T cell receptor alpha chain protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10496
95 % 2 2 10780 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 4 5 5749
70 % 161 166 196
50 % 371 394 78
40 % 371 394 93
30 % 371 394 93
Entity #5 | Chains: E,J,O,T
GF4 T cell receptor beta chain protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10495
95 % 2 2 10779 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 14 16 2514
70 % 356 377 43
50 % 378 403 66
40 % 378 403 84
30 % 378 403 88

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures