Sequence Similarity Clusters for the Entities in PDB 5VOD

Entity #1 | Chains: A
Envelope glycoprotein H protein, length: 725 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 34743
95 % 3 3 26383 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 3 25497
70 % 3 3 22778
50 % 3 3 20063
40 % 3 3 18326
30 % 3 3 16447
Entity #2 | Chains: B
Envelope glycoprotein L protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31363
95 % 3 3 26385 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 3 3 25499
70 % 3 3 23206
50 % 3 3 20433
40 % 3 3 18664
30 % 3 3 16739
Entity #3 | Chains: C
Envelope glycoprotein UL128 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 34745
95 % 3 3 28837 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 2.2
PDBFlex
90 % 3 3 24940
70 % 3 3 22779
50 % 3 3 20432
40 % 3 3 18663
30 % 3 3 16738
Entity #4 | Chains: D
Envelope glycoprotein UL130 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31991
95 % 3 3 26848 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 3 25922
70 % 3 3 23561
50 % 3 3 20739
40 % 3 3 18947
30 % 3 3 16981
Entity #5 | Chains: E
Envelope glycoprotein UL131A protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30170
95 % 3 3 25499 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 3 3 24411
70 % 3 3 22547
50 % 3 3 19879
40 % 3 3 18160
30 % 3 3 16279
Entity #6 | Chains: H
Fab 9I6 heavy chain protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67861
95 % 1 1 45875
90 % 1 1 43519
70 % 2652 2805 1
50 % 2774 2949 1
40 % 2774 2949 1
30 % 5548 5899 1
Entity #7 | Chains: L
Fab 9I6 light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78524
95 % 1 1 45874
90 % 103 106 274
70 % 2161 2290 2
50 % 2739 2908 2
40 % 2739 2908 2
30 % 5549 5899 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures