Sequence Similarity Clusters for the Entities in PDB 5VO0

Entity #1 | Chains: A,D
TNF receptor-associated factor 6 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42868
95 % 1 1 37951 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 36238
70 % 1 1 32250
50 % 2 2 18775
40 % 2 2 16036
30 % 2 2 14507
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22952
95 % 26 28 929 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 26 28 966
70 % 26 28 1004
50 % 26 28 1034
40 % 104 110 340
30 % 164 174 205
Entity #3 | Chains: C,F
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 295 388 4
95 % 365 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 373 501 6
70 % 415 544 9
50 % 430 564 11
40 % 430 568 14
30 % 441 588 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures