Sequence Similarity Clusters for the Entities in PDB 5VNZ

Entity #1 | Chains: A,D
TNF receptor-associated factor 6 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42594
95 % 1 1 43084 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 29849
70 % 3 3 16575
50 % 3 3 14915
40 % 3 3 13897
30 % 3 3 12643
Entity #2 | Chains: B,E
Ubiquitin-conjugating enzyme E2 N protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22765
95 % 24 28 905 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 24 28 945
70 % 24 28 994
50 % 24 28 1023
40 % 99 110 336
30 % 159 174 201
Entity #3 | Chains: C,F
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 284 387 4
95 % 354 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 362 498 6
70 % 407 548 9
50 % 416 563 11
40 % 416 567 14
30 % 426 583 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures