Sequence Similarity Clusters for the Entities in PDB 5VMM

Entity #1 | Chains: A,C
Hemoglobin subunit alpha protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 219 43
95 % 242 256 40 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 243 257 44
70 % 321 340 22
50 % 696 735 7
40 % 696 735 7
30 % 744 783 10
Entity #2 | Chains: B,D
Hemoglobin subunit beta protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 155 166 78
95 % 244 257 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 248 261 37
70 % 334 353 17
50 % 697 735 7
40 % 697 735 7
30 % 745 783 10
Entity #3 | Chains: E,F
Iron-regulated cell wall-anchored protein protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42294
95 % 1 1 33532 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 37875
70 % 1 1 28806
50 % 2 3 10718
40 % 2 3 10083
30 % 2 3 9333
Entity #4 | Chains: H,J
Iron-regulated cell wall-anchored protein protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42295
95 % 2 2 20225 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 2 3 17183
70 % 1 1 28807
50 % 1 1 25242
40 % 2 3 7981
30 % 2 3 7470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures