Sequence Similarity Clusters for the Entities in PDB 5VMA

Entity #1 | Chains: A
Glycoside hydrolase protein, length: 709 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 33216
95 % 1 3 29629 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 3 28560
70 % 1 3 25770
50 % 1 3 22604
40 % 9 25 2173
30 % 9 25 2188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5YJ6 1 A Dockerin type I repeat-containing protein UNP residues 31-666 1515
2 4JJJ 1 A Cellulose 1,4-beta-cellobiosidase UNP residues 343-984 2021 3.2.1.91 | Details
3 4XWM 1 A Exoglucanase S catalytic domain, UNP residues 32-674 1493 3.2.1.91 | Details
4 4FUS 1 A RTX toxins and related Ca2+-binding protein UNP residues 33-704 158327 3.2.1.4 | Details
5 4L6X 1 A Glycoside hydrolase family 48 unp residues 1122-1759 31899 3.2.1.4 | Details
6 1G9G 1 A CELLULASE CEL48F CATALYTIC MODULE 1521 3.2.1.4 | Details
7 6D5D 1 A glycoside hydrolase WP_045175321 GH48 module 1387557 3.2.1 | Details
8 2QNO 1 A Endoglucanase F Catalytic module 1521 3.2.1.4 | Details
9 5VMA 1 A Glycoside hydrolase 1408
10 5BV9 1 A Cellulose 1,4-beta-cellobiosidase 1408 3.2.1.91 | Details
11 5CVY 1 A Glycoside hydrolase 1408
12 1FAE 1 A ENDO-1,4-BETA-GLUCANASE F CATALYTIC MODULE 1521 3.2.1.4 | Details
13 4XWL 1 A Exoglucanase S CATALYTIC DOMAIN, UNP RESIDUES 32-674 1493 3.2.1.91 | Details
14 1G9J 1 A CELLULASE CEL48F CATALYTIC MODULE 1521 3.2.1.4 | Details
15 1FBW 1 A ENDO-1,4-BETA-GLUCANASE F CATALYTIC MODULE 1521 3.2.1.4 | Details
16 1FCE 1 A CELLULASE CELF CATALYTIC DOMAIN 1521 3.2.1.4 | Details
17 4L0G 1 A Glycoside hydrolase family 48 unp residues 1122-1759 31899 3.2.1.4 | Details
18 4TXT 1 A Glycoside hydrolase family 48 UNP residues 1122-1759 31899 3.2.1.4 | Details
19 1F9D 1 A ENDO-1,4-BETA-GLUCANASE F CATALYTIC MODULE 1521 3.2.1.4 | Details
20 1FBO 1 A ENDO-1,4-BETA-GLUCANASE F CATALYTIC MODULE 1521 3.2.1.4 | Details
21 1L1Y 1 A, B, C, D, E, F cellobiohydrolase 1515 3.2.1.176 | Details
22 1F9O 1 A ENDO-1,4-BETA-GLUCANASE F CATALYTIC MODULE 1521 3.2.1.4 | Details
23 1L2A 1 A, B, C, D, E, F cellobiohydrolase 1515 3.2.1.176 | Details
24 4EL8 1 A Glycoside hydrolase family 48 UNP residues 1126-1759 31899 3.2.1.4 | Details
25 4XWN 1 A Exoglucanase S catalytic domain, UNP residues 32-674 1493 3.2.1.91 | Details