Sequence Similarity Clusters for the Entities in PDB 5VKD

Entity #1 | Chains: A
Nucleoprotein protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 57481
95 % 1 2 40841 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 1 2 38917
70 % 1 5 7082
50 % 1 6 6002
40 % 1 6 5843
30 % 1 6 5574
Entity #2 | Chains: H
Fab Heavy Chain protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40318
95 % 1 2 32351 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 19 320 19
70 % 202 2883 1
50 % 219 3028 1
40 % 219 3028 1
30 % 429 6055 1
Entity #3 | Chains: L
Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 2880
95 % 14 227 74 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 31 519 4
70 % 161 2352 2
50 % 205 2983 2
40 % 205 2983 2
30 % 430 6055 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures