Sequence Similarity Clusters for the Entities in PDB 5VIT

Entity #1 | Chains: A,I,P,V
MdcA protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15893
95 % 1 2 15091 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 14902
70 % 2 3 10582
50 % 2 3 9719
40 % 2 3 9206
30 % 2 3 8525
Entity #2 | Chains: C,K,R,X
MdcC protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15894
95 % 1 2 15092 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 14903
70 % 1 2 14019
50 % 1 2 12697
40 % 1 2 11851
30 % 1 2 10827
Entity #3 | Chains: D,L,S,Y
MdcD protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11066
95 % 2 3 11168 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 2 3 11050
70 % 2 3 10583
50 % 2 3 9720
40 % 2 3 9207
30 % 2 3 8526
Entity #4 | Chains: E,M,T,Z
MdcE protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11410
95 % 2 3 11431 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 2 3 11290
70 % 2 3 10796
50 % 2 3 9898
40 % 2 3 9354
30 % 2 3 8654

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures