Sequence Similarity Clusters for the Entities in PDB 5VHJ

Entity #1 | Chains: G
26S proteasome non-ATPase regulatory subunit 10 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 14 5020
95 % 7 14 5808
90 % 10 17 4234
70 % 10 17 4279
50 % 10 17 4186
40 % 10 17 4121
30 % 14 21 2971
Entity #2 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12963
95 % 1 7 13111
90 % 1 7 12913
70 % 4 10 8984
50 % 24 65 840
40 % 35 76 702
30 % 45 86 554
Entity #3 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13776
95 % 1 7 13603
90 % 1 7 13402
70 % 4 10 8593
50 % 25 65 840
40 % 36 76 702
30 % 46 86 554
Entity #4 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 12725
95 % 1 7 12625
90 % 1 7 12542
70 % 4 10 8052
50 % 26 65 840
40 % 37 76 702
30 % 47 86 554
Entity #5 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13443
95 % 1 7 13604
90 % 1 7 13403
70 % 4 10 8463
50 % 27 65 840
40 % 38 76 702
30 % 48 86 554
Entity #6 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13257
95 % 1 7 13697
90 % 1 7 13423
70 % 1 7 12812
50 % 28 65 840
40 % 39 76 702
30 % 49 86 554
Entity #7 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 266 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 13702
95 % 1 7 13468
90 % 1 7 13277
70 % 4 10 8286
50 % 29 65 840
40 % 40 76 702
30 % 50 86 554
Entity #8 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 784 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 29 1811
95 % 15 33 2020
90 % 15 33 2073
70 % 1 3 26828
50 % 1 3 23526
40 % 1 3 21489
30 % 1 3 19224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures