Sequence Similarity Clusters for the Entities in PDB 5VHF

Entity #1 | Chains: G
26S proteasome non-ATPase regulatory subunit 10 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 14 4918
95 % 4 14 5402
90 % 7 17 3979
70 % 7 17 3919
50 % 7 17 3861
40 % 7 17 3809
30 % 11 21 2756
Entity #10 | Chains: W
26S proteasome non-ATPase regulatory subunit 12 protein, length: 456 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 28 1733
95 % 12 32 1935
90 % 12 32 1982
70 % 12 32 2010
50 % 12 32 2063
40 % 23 56 1178
30 % 23 56 1229
Entity #11 | Chains: X
26S proteasome non-ATPase regulatory subunit 11 protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 32 1462
95 % 12 32 1921
90 % 12 32 1968
70 % 14 34 1908
50 % 14 34 1901
40 % 14 34 1962
30 % 14 34 1987
Entity #12 | Chains: Y
26S proteasome non-ATPase regulatory subunit 6 protein, length: 378 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 28 1710
95 % 12 32 1892
90 % 12 32 1937
70 % 12 32 1989
50 % 12 32 2049
40 % 12 32 2105
30 % 23 56 1237
Entity #13 | Chains: Z
26S proteasome non-ATPase regulatory subunit 7 protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 6984
95 % 1 11 7725
90 % 1 11 7704
70 % 1 11 7542
50 % 7 17 4479
40 % 7 17 4372
30 % 7 17 4261
Entity #14 | Chains: a
26S proteasome non-ATPase regulatory subunit 13 protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 26 1895
95 % 12 32 1902
90 % 12 32 1949
70 % 12 32 2004
50 % 12 32 2033
40 % 12 14 2090
30 % 23 57 1213
Entity #15 | Chains: b
26S proteasome non-ATPase regulatory subunit 4 protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 6975
95 % 1 11 7597
90 % 1 11 7675
70 % 1 11 7439
50 % 8 18 4175
40 % 9 19 3854
30 % 9 19 3780
Entity #16 | Chains: c
26S proteasome non-ATPase regulatory subunit 14 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 32 1455
95 % 12 32 1914
90 % 12 32 1984
70 % 12 32 2034
50 % 24 33 1132
40 % 24 57 1171
30 % 24 57 1217
Entity #17 | Chains: d
26S proteasome non-ATPase regulatory subunit 8 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75294
95 % 1 1 53599
90 % 1 1 50644
70 % 1 1 44319
50 % 1 1 38287
40 % 1 1 34603
30 % 1 1 30454
Entity #18 | Chains: e
26S proteasome complex subunit SEM1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 33 1353
95 % 16 33 1774
90 % 16 33 1819
70 % 16 33 1856
50 % 16 35 1786
40 % 16 35 1845
30 % 16 35 1873
Entity #19 | Chains: f
26S proteasome non-ATPase regulatory subunit 2 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 29 1646
95 % 12 33 1866
90 % 12 33 1903
70 % 12 30 2190
50 % 12 30 2247
40 % 23 53 1264
30 % 23 53 1302
Entity #2 | Chains: A
26S proteasome regulatory subunit 7 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15952
95 % 1 6 15179
90 % 1 6 14930
70 % 1 6 14722
50 % 1 6 13301
40 % 59 147 357
30 % 59 147 370
Entity #3 | Chains: B
26S proteasome regulatory subunit 4 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 15679
95 % 1 6 14954
90 % 1 6 14702
70 % 7 16 4824
50 % 36 77 537
40 % 60 147 357
30 % 60 147 370
Entity #4 | Chains: C
26S proteasome regulatory subunit 8 protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 30 1579
95 % 12 30 2144
90 % 12 30 2202
70 % 24 55 1139
50 % 37 77 537
40 % 61 147 357
30 % 61 147 370
Entity #5 | Chains: D
26S proteasome regulatory subunit 6B protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 27 1808
95 % 12 31 2022
90 % 12 31 2060
70 % 12 31 2128
50 % 24 55 1175
40 % 24 55 1217
30 % 47 101 625
Entity #6 | Chains: E
26S proteasome regulatory subunit 10B protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 27 1789
95 % 12 31 1983
90 % 12 31 2030
70 % 12 31 2083
50 % 18 49 1307
40 % 62 147 357
30 % 62 147 370
Entity #7 | Chains: F
26S proteasome regulatory subunit 6A protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 27 1816
95 % 1 9 9288
90 % 1 9 9240
70 % 13 33 2123
50 % 1 9 8411
40 % 63 147 357
30 % 63 147 370
Entity #8 | Chains: U
26S proteasome non-ATPase regulatory subunit 1 protein, length: 841 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76033
95 % 1 1 54062
90 % 1 1 51061
70 % 12 32 2014
50 % 12 32 2086
40 % 24 56 1174
30 % 24 56 1224
Entity #9 | Chains: V
26S proteasome non-ATPase regulatory subunit 3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76034
95 % 1 1 54063
90 % 1 1 51062
70 % 1 1 44656
50 % 1 1 38588
40 % 1 1 34876
30 % 1 1 30684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures