Sequence Similarity Clusters for the Entities in PDB 5VH4

Entity #1 | Chains: A,H
Infliximab Fab Heavy Chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5667
95 % 2 7 6268 Flexibility: Medium
Max RMSD: 5.0, Avg RMSD: 3.1
PDBFlex
90 % 2 11 4717
70 % 430 2965 1
50 % 456 3117 1
40 % 456 3117 1
30 % 901 6228 1
Entity #2 | Chains: B,L
Infliximab Fab Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5490
95 % 2 7 6435 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.5
PDBFlex
90 % 6 44 716
70 % 351 2416 2
50 % 439 3067 2
40 % 439 3067 2
30 % 902 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6UGS 2 B, L Infliximab (Remicade) Fab Light Chain 9606
2 5VH4 2 B, L Infliximab Fab Light Chain 10090
3 5VH3 2 B, L Infliximab Fab Light Chain 10090
4 6UGU 2 B, L PF06438179 Fab Light Chain 9606
5 6UGT 2 B, L PF06438179 Fab Light Chain 9606
6 6UGV 2 B, L Infliximab Fab Light Chain 9606
7 4G3Y 1 L infliximab Fab L 9606