Sequence Similarity Clusters for the Entities in PDB 5VH4

Entity #1 | Chains: A,H
Infliximab Fab Heavy Chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5446
95 % 2 7 6349 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 2 11 4735
70 % 431 2969 1
50 % 457 3121 1
40 % 457 3121 1
30 % 903 6236 1
Entity #2 | Chains: B,L
Infliximab Fab Light Chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 5422
95 % 2 7 6374 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.3
PDBFlex
90 % 6 44 721
70 % 352 2418 2
50 % 440 3071 2
40 % 440 3071 2
30 % 904 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6UGS 1 A, H Infliximab (Remicade) Fab Heavy Chain 9606
2 5VH4 1 A, H Infliximab Fab Heavy Chain 10090
3 5VH3 1 A, H Infliximab Fab Heavy Chain 10090
4 6UGU 1 A, H PF06438179 Fab Heavy Chain 9606
5 6UGT 1 A, H PF06438179 Fab Heavy Chain 9606
6 6UGV 1 A, H Infliximab Fab Heavy Chain 9606
7 4G3Y 2 H infliximab Fab H 9606